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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1181 fasta sequence
[TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGAACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCTTGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTTTGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCTTGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCTTGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGCATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATG-TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT-GCCAGGTGACTTG-TTCTGTTCTTGTCGTAAAAATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC]
[+] EMBL AK062977 [TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGAACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCTTGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTTTGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCTTGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCTTGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGCATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATG TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT GCCAGGTGACTTG TTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC]
[+] EMBL BI803402 [ AGTTAGGTAGGATTTTTGGTGTAATGCTAGCAGATATACCGAGAGAACCGATATG TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTCCCCCGGTGACTTGCTTCTGTTCTTGTCGTAAAAA ]
[+] EMBL BI804350 [ AGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGCTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT GCCAGGTGACTTG TTCTGTTCTTGTCGTAAAAA ]
consensusID : consensus_9735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence
[TGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAAATAAAAAG]
[-] EMBL CB622257 [TGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAAATAAAAAG]
consensusID : consensus_9735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCCTTAAAGGA]
[-] EMBL CB622256 [TCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCCTTAAAGGA]
consensusID : consensus_9735#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCACATATCGGTTCTCTCGGTATATCTGATAGCATTACACCAAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAAAAAAAAAAAAAAAAAGGGGGGGGCCNCNAT]
[+] EMBL OSC30371 [TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCACATATCGGTTCTCTCGGTATATCTGATAGCATTACACCAAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAAAAAAAAAAAAAAAAAGGGGGGGGCCNCNAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGA 60
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 ACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCT 120
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTT 180
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCT 240
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCT 300
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGC 360
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ------------------------------TGTTGGGCTATCATTAGCACAGATAGGAGA 30
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 ATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGA 420
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 GTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTA 90
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 GTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTA 480
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 TCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACT 150
consensus_9735#2 ---------------------------------------------TCTCATTTTCAAACT 15
consensus_9735#0 TCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACT 540
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 210
consensus_9735#2 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 75
consensus_9735#0 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 600
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 GCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 270
consensus_9735#2 GCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 135
consensus_9735#0 GCAGAATGAG------------GATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 648
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 330
consensus_9735#2 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 195
consensus_9735#0 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 708
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 390
consensus_9735#2 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 255
consensus_9735#0 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 768
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 450
consensus_9735#2 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 315
consensus_9735#0 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 828
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 510
consensus_9735#2 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 375
consensus_9735#0 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 888
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 570
consensus_9735#2 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 435
consensus_9735#0 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 948
consensus_9735#3 -----------------------TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCA 37
* *** * * ** * * * *
consensus_9735#1 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 629
consensus_9735#2 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 494
consensus_9735#0 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 1007
consensus_9735#3 CATATCGGTTCTCTCGGTATATCTGATAGCAT-TACACCAAGAGAACCGATATGTGCTGA 96
* * * *** ** ** ** ** ** *** ********************
consensus_9735#1 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 689
consensus_9735#2 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 554
consensus_9735#0 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 1067
consensus_9735#3 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAA 156
***********************************************************
consensus_9735#1 GTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAAC 749
consensus_9735#2 GTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAAC 614
consensus_9735#0 GTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTAAAAATAAACATTTTGTCACAAC 1127
consensus_9735#3 AAAAAAAAAAAAAAAGGGGGGGGCCNCNAT------------------------------ 186
* * * * * *
consensus_9735#1 ATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAA 809
consensus_9735#2 ATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCC 674
consensus_9735#0 ATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC------ 1181
consensus_9735#3 ------------------------------------------------------------
consensus_9735#1 ATAAAAAG 817
consensus_9735#2 TTAAAGGA 682
consensus_9735#0 --------
consensus_9735#3 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||