|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1196 fasta sequence
[TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT-GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC-AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAACCTACTTGTGAAAAAA]
[+] EMBL AK059296 [TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAAC ]
[+] EMBL AK101236 [TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGC AAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTC ]
[-] EMBL CB964609 [ CCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGGTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCGGACCAGGCGATGTTCAAGATCCTCGGTCTAATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAATACGTTCGGTGCGAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACNATATCTTGTAGTAAGTTAG AAAAGATAGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCA TTGTGACATTTCAATCAGTTTCAATCTCAGTTTTCCTT ]
[+] EMBL BI805197 [ GAATTGTGATGGCCGAAGGCCATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCAC AAC ACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGAC CTGAGAGATGTGAGGAAGCTGCATC ATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTAC ATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCTTTGTTCTTGTTGTGCCATTTTGTGACATTTC ATCAGCTTC ATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATC AATGAACCTACTTGTGAAAAAA]
[+] EMBL BI811956 [ taCTGGGCCCAACTCCATCTTC CTGGTGAGAAACTTCTAAC ACCGCATACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAA CTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCaaaaaa ]
consensusID : consensus_9741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[ATAAGCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGNCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCAAAAAAAAAAAAAAAA]
[-] EMBL CA762191 [ATAAGCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGNCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9741#0 TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAAT 60
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 AAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTAC 120
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 AGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGG 180
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 CAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGA 240
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGG 300
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 AGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTG 360
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTT 420
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 CCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAA 480
consensus_9741#1 --------------------------------------------------------ATAA 4
****
consensus_9741#0 GCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGT 540
consensus_9741#1 GCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGT 64
**************************** *******************************
consensus_9741#0 TGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTG 600
consensus_9741#1 TGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGN 124
**********************************************************
consensus_9741#0 CTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCA 660
consensus_9741#1 CTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCA 184
************************************************************
consensus_9741#0 TGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAG 720
consensus_9741#1 TGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAG 244
************************************************************
consensus_9741#0 TACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCG 780
consensus_9741#1 TACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCG 304
**************************** ************************** ****
consensus_9741#0 CTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCA 840
consensus_9741#1 CTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCA 364
*********************** ************************************
consensus_9741#0 AGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACA 900
consensus_9741#1 AGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACA 424
*********** ************************************************
consensus_9741#0 CTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACG 960
consensus_9741#1 CTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACG 484
*********************************** ************************
consensus_9741#0 TTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAAT 1020
consensus_9741#1 TTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAAT 544
************************************************************
consensus_9741#0 ATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTG 1080
consensus_9741#1 ATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTG 604
************************************************************
consensus_9741#0 TTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCT 1140
consensus_9741#1 TTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCT 664
************************************************************
consensus_9741#0 CTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAACCTACTTGTGAAAAAA 1196
consensus_9741#1 CAAAAAAAAAAAAAAAA--------------------------------------- 681
* * * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||