These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1196 fasta sequence [TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT-GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC-AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAACCTACTTGTGAAAAAA] [+] EMBL AK059296 [TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAAC ] [+] EMBL AK101236 [TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAATAAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTACAGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGC AAAAAAGGCAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGAGGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGGAGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTGGGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTTCCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAAGCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTGCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTC ] [-] EMBL CB964609 [ CCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGAT GCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGGTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCGGACCAGGCGATGTTCAAGATCCTCGGTCTAATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAATACGTTCGGTGCGAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACNATATCTTGTAGTAAGTTAG AAAAGATAGACCC AAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCA TTGTGACATTTCAATCAGTTTCAATCTCAGTTTTCCTT ] [+] EMBL BI805197 [ GAATTGTGATGGCCGAAGGCCATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCAC AAC ACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGAC CTGAGAGATGTGAGGAAGCTGCATC ATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTAC ATATCTTGTAGTAAGTTAGAAAAAGATCGACCC AAATAAATAGGGAATTTTCTGTATCTTTGTTCTTGTTGTGCCATTTTGTGACATTTC ATCAGCTTC ATCTCAGTTTTCCTTTTTCCTCTTTGATGCTACACTGAAGTACTGATCATTATC AATGAACCTACTTGTGAAAAAA] [+] EMBL BI811956 [ taCTGGGCCCAACTCCATCTTC CTGGTGAGAAACTTCTAAC ACCGCATACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAA CTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCTTTGATGCaaaaaa ] consensusID : consensus_9741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [ATAAGCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGNCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCAAAAAAAAAAAAAAAA] [-] EMBL CA762191 [ATAAGCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGTTGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGNCTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCATGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCGCTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCAAGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCTCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9741#0 TCAAGTCCATAGAAGTGTCCATAAATTCAGAGAAGTGCAACAGTGCACTCTTCTTTCAAT 60 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 AAAGACAGGTGGGTGCAGCGAAGATTGTTCATACTGCCCCCAGTCCTCAAGATACAGTAC 120 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 AGGATTGAAGGCACAAAAATTAATGAATAAAGATGCTGTCTTAGAAGCAGCAAAAAAAGG 180 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 CAAAGGAGGCTGGGAGCACCCGCTTTTGCATGGGAGCAGCATGGAGAGAAACCATTGGGA 240 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GGAAAACAAATTTTAATCAGATCCTTGAATATGTCAAGGACATTAGAGGTATGGGCATGG 300 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 AGGTCTGTTGCACTCTTGGCATGCTAGAGAAGCAACAAGCTGAAGAACTCAAGAAGGCTG 360 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GGCTTACAGCATATAATCATAATTTAGATACATCAAGAGAATATTACCCCAACATTATTT 420 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 CCACAAGATCATATGACGATAGACTGCAGACTCTTGAGCATGTCCGTGAAGCTGGAATAA 480 consensus_9741#1 --------------------------------------------------------ATAA 4 **** consensus_9741#0 GCATATGCTCAGGTGGAATTATTGGTCTTGGAGAGGCAGAGGAGGACCGTGTAGGATTGT 540 consensus_9741#1 GCATATGCTCAGGTGGAATTATTGGTCTGGGAGAGGCAGAGGAGGACCGTGTAGGATTGT 64 **************************** ******************************* consensus_9741#0 TGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTTG 600 consensus_9741#1 TGCATACACTGGCTACTTTGCCTGCACACCCAGAGAGTGTTCCTATTAATGCATTGGTGN 124 ********************************************************** consensus_9741#0 CTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCA 660 consensus_9741#1 CTGTCAAAGGCACGCCCCTTCAAGATCAGAAGCCTGTAGAGATCTGGGAAATGATCCGCA 184 ************************************************************ consensus_9741#0 TGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAG 720 consensus_9741#1 TGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAG 244 ************************************************************ consensus_9741#0 TACGTTTCTCCATGCCAGAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCG 780 consensus_9741#1 TACGTTTCTCCATGCCAGAGCAAGCGCTTTGCTTCCTAGCTGGGGCCAACTCCATTTTCG 304 **************************** ************************** **** consensus_9741#0 CTGGTGAGAAACTTCTAACAACCACAAACAACGACTTTGATGCAGACCAGGCGATGTTCA 840 consensus_9741#1 CTGGTGAGAAACTTCTAACAACCGCAAACAACGACTTTGATGCAGACCAGGCGATGTTCA 364 *********************** ************************************ consensus_9741#0 AGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACA 900 consensus_9741#1 AGATCCTTGGTTTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAGACA 424 *********** ************************************************ consensus_9741#0 CTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACG 960 consensus_9741#1 CTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACCCCAATAGAAACTCTTGAGAACACG 484 *********************************** ************************ consensus_9741#0 TTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAAT 1020 consensus_9741#1 TTCGGTGCAAAAGTAGCACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAAT 544 ************************************************************ consensus_9741#0 ATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTG 1080 consensus_9741#1 ATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAAATAGGGAATTTTCTGTATCATTG 604 ************************************************************ consensus_9741#0 TTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCT 1140 consensus_9741#1 TTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTTCCT 664 ************************************************************ consensus_9741#0 CTTTGATGCTACACTGAAGTACTGATCATTATCAAATGAACCTACTTGTGAAAAAA 1196 consensus_9741#1 CAAAAAAAAAAAAAAAA--------------------------------------- 681 * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||