These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 845 fasta sequence [GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT-GCT-TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT-TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT-CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA-CA-AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC-CAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA] [+] EMBL BI813523 [GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT GCT TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC CAAAAAaaaaa ] [+] EMBL BI811060 [ AAAGAGCTCTCCCTTGTAGCACCAA CTGGCTGTGAAGTCGGTGAAGGACCTTCCAGCCCTATCTGGTTTCCTGTTCGGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTA GCA TTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGA CAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACCACAGGTTGTTAATCTTGAAGAATTTGGGCTGT CAGTCACTTG ] [+] EMBL BM419487 [ CGTGGCCTAGAGAGTGAGATGTGAAGACCCNACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATCNCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAA ] [+] EMBL BI813328 [ ctgCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTT GGCTGT CAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAA CAAAATATC CAAAAAGGGAAAATGTCCAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAACATTTCTGGAGACTCATCCACCCTTAACAAAAAA] consensusID : consensus_9756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC-ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA] [+] EMBL BQ907314 [TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAA ] [+] EMBL BI812061 [ AGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCCGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCAAATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACAC AGGTAAGGGC TTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9756#0 ------------------------------------------------------------ consensus_9756#1 TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCT 60 consensus_9756#0 -----------------------------------GAGGGCTCTCCCACAACAGCTTGGA 25 consensus_9756#1 TTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACA-CAGCTTGGA 119 *************** ********* consensus_9756#0 CACGAG-CCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 84 consensus_9756#1 CACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 179 ****** ***************************************************** consensus_9756#0 AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 144 consensus_9756#1 AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 239 ************************************************************ consensus_9756#0 GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTG 204 consensus_9756#1 GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTG 298 ********************************************** ************* consensus_9756#0 TTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 264 consensus_9756#1 TTGAGGAGTTAGGCA-GTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 357 *************** ******************************************** consensus_9756#0 CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 324 consensus_9756#1 CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 417 ************************************************************ consensus_9756#0 GAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACAAGGTTGTTAA 384 consensus_9756#1 GAGTGAGATGTGAAGACCCA-CTAAAAGACAGTAGATTGGTAGAGACACAAGGT------ 470 ******************** ********************************* consensus_9756#0 TCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTAT 444 consensus_9756#1 -----AAGGGCATTGGATTTGTATTTGT---TGATACATATTTTTATTCTATC--GTTAT 520 *** * ** * ** * * * *** ******* ** ** * ***** consensus_9756#0 TGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATAT 504 consensus_9756#1 C------TAAAATAGTGGAAACATATTTTAATTTCAAAAAAA------------------ 556 * ***** * *** ** ** * *** ******* consensus_9756#0 CCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTC 564 consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 ATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGT 624 consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 AGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCG 684 consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 GAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAG 744 consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 ATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTT 804 consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 GTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA 845 consensus_9756#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||