cluster # 9757

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9757 cluster # 9757 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9757#0 length = 601 sequences # 5

consensus_9757#1 length = 491 sequences # 1

consensusID : consensus_9757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 601
fasta sequence

                              [AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAAGGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAAATTTTGCCCCC]

[+] EMBL CA765157             [AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAAGGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGNTCTTTTCTAATGCAAAAAATTTTGCCCCC]
[-] EMBL CB638111             [                                                                                                              AGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACTCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCTTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGTTGATGATCGCAAAGTTCCTTGCCTTTGCCAAACGGCTAATTGTGGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTAAAAG AATTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGAAAATGCTTTCCCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGTTTCCATCCCTGTAAATGGCA                                                   ]
[+] EMBL AK062870             [                                                                                                                                                                                                                     ATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA           ]
[+] EMBL CB097157             [                                                                                                                                                                                                                            GAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA           ]
[+] EMBL CA758148             [                                                                                                                                                                                                                                                                                                                                                                  TCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA           ]




>consensus_9757#0
AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAA
GGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAG
TAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACGC
CAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCG
CCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACG
AGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGA
ATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTC
TTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCT
TTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCT
GTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAAATTTTGCCCC
C

consensusID : consensus_9757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCTGCACGCCAAACTGCTATCAAGGATTATGATTGTGGGCATGACGAGACCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAATTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGGTTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATGCTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCATGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGA]

[+] EMBL BI811389             [CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCTGCACGCCAAACTGCTATCAAGGATTATGATTGTGGGCATGACGAGACCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAATTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGGTTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATGCTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCATGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGA]




>consensus_9757#1
CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCTGCACGCCA
AACTGCTATCAAGGATTATGATTGTGGGCATGACGAGACCGTATTGTCCTAATCGCCAAG
AAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCT
GATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAATTGCATGG
AATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGGTTGCTTGT
GCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATGCTGTTGAC
CCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCATGTTGAGG
AAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCAC
TAATTTATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9757#0      AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAA 60
consensus_9757#1      ------------------------------------------------------------
                                                                                  

consensus_9757#0      GGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAG 120
consensus_9757#1      ------------------------------------------------------------
                                                                                  

consensus_9757#0      TAGTCGTTGATGCCACAGATAAA--GGAAACGTGGCACG-CTTGATTAATCATTCTTGCA 177
consensus_9757#1      ----CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCT-GCA 55
                          * * **  ***********  **** ********  **************** ***

consensus_9757#0      CGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAA 237
consensus_9757#1      CGCCAAACTGCTAT-CAAGGATTATGATTGTGGG-CATGACGAGA-CCGTATTGTCCTAA 112
                      ************** ************ ****** ********** **************

consensus_9757#0      TCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTG 297
consensus_9757#1      TCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTG 172
                      ************************************************************

consensus_9757#0      ACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCA-AACGGCTAATTGTCGT---AAA 353
consensus_9757#1      ACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAA 232
                      ************************************* ************  *    ***

consensus_9757#0      TT-CATGAATT--AGTTTACTGTAGATGT----CAAATTGG-CCATT-AGT-TTAC---- 399
consensus_9757#1      TTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGG 292
                      ** **** * *  *********  **  *    ******** ***** *** ****    

consensus_9757#0      -------TGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGC-TGGTGGTATATG--- 448
consensus_9757#1      TTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATG 352
                             ** * ** ****  *   * ***************** ******   ***   

consensus_9757#0      --------CTTTACCTTGTTCTT--TGTTGCTT--CCCCAT----TCTTTAACAT-AGCA 491
consensus_9757#1      CTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCA 412
                              * **    ** * **  *** ***   ******    * ** ***** ****

consensus_9757#0      TTT---AGAAAATAAG---TTTAGCTAT--AGCTCAGAAGCGCGAGCTTCCATCCCTGTA 543
consensus_9757#1      TGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTA 472
                      * *    ********    * *****    ******************************

consensus_9757#0      AATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAAATTTTGCCCCC 601
consensus_9757#1      AATGGCACTAATTTATCGA--------------------------------------- 491
                      *******************