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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 4271 fasta sequence
[ACCACCTCCTCTCCTCTCCTCTCCTCTCCTTCTTCCTCTTCCCCTGCACTGCACTGCCACTGCATTAATCCCCTTCACCGATTCCTCCTCTCCTCTCCTCCACCTCCACCTCCACCGCACGCACCAAACCGCAGTTTCTCTCTCTCTCCCTTTCGCTGTTCCTGTGTGCCTTGCTTAGCTGCCGCTTTCCTCTCTCCCTCCCTCTCTTTCTTTCTTCCTCTCTCTGCTCAACCTCACAAAAATTCCCCCCTTTTGCTCTTTCTCTTTCTTTCCTCCCCGATCGACTTCTTCTTCTTCTTCACCTTCTCCAGTTCTCCTCATCCGTCTTCGGCGATCTTTGCCGCTGTGAACATTTGACAGTTTACAGGTTCCTCCATTTCAGTTGTTGGATTAAGAAAGAGGCTTTATGCTTTATAAATAAGTAAGCATCATCATCAATATAAGTTGTGGCTGCTCTTAAAGATCCTCAGATTCTGTACAAGTTCAGAGCTTCCTCTGTTTGGCAGTGTCAGTACACGTGCTTGCATAGTTCATAACTGGGGTGGAGATATCTTAGTTTCATGTTCTTTGTGCTTCTTGGCTCTTACCCAGCTGGTTTAACATCTGATGGGCTGCTCACCTTCTAAGGTGTGTTCATGTCCACATTATAAGGGCAGTTTGTGCTTCTGTGACTGTGGATGCTTTGGACAAACACCTGACTCCCCAAGAGAGTCAAGGGGAAAATCAAACCGGGTTAGGGGAAAGACAGATTCTAGTGCTTCAGATGCTTCTTCTGATGACCTAGAGGAAGATGATGATGGATTGCACCAAATGAACATTACAAGGGACTCTAATGTTGGTATCAATCGACTCTCAAGGGTCTCATCACAATTTCTTCCACCAGAAGGTTCACGTAAAGTTCGAATCCCATTGGGGAATTATGACCTGAGATATTCCTACTTGTCTCAAAGAGGCTACTACCCAGAATCATTGGACAAGCCAAACCAAGACAGTTTTTGTATACATACTCCATTTGGAACAAGCCCTGATGACCATTTCTTTGGTGTATTTGATGGCCATGGAGAATATGGAGCTCAGTGCTCACAATTTGTAAAGCGAAGACTATGCGAAAACCTGCTCAGAGATGACCGGTTCCGTACTGATGTTGTTCAGGCTCTTCATTCTGCTTTCTTGGCAACAAATTCACAGCTTCATGCAGACAGCTTAGATGATTCTATGAGTGGTACTACTGCAGTCACTGTGCTGGTGAGGGGTAAAACTATTTACATTGCGAATACGGGTGATTCACGTGCTGTTATTGCCGAAAAAAAGAGGGGAAGATGTTGTTGCTGTTGACCTGTCCATAGATCAAACACACTACAGGACTGATGAGCTTGAAAGGGTCAAGGAGTGTGGTGCTAGGGTTATGACGTTGGATCAGATAGAGGGGCTAAAGAACCCAGATGTACAGTGTTGGGGCACCGAGGAAAGTGATGACGGTGATCCTCCAAGGTTGTGGGTGCAAAATGGCATGTATCCAGGAACTGCTTTTACTCGCAGCATTGGAGATTCTGTCGCTGAATCTATCGGTGTTGTCGCTAATCCTGAGATTTTTATCCTGGAGCTCAATGCCAACCATCCATTCTTTGTTCTTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGTCAAACTGTTGTCGACATGATTGCTAAATACAAGGATCCTCGTGATGCGTGCGCTGCAATTGTTGCTGAATCCTATCGCCTCTGGCTACAGTATGAAACTCGTACAGATGACATTACAATAATAGTTGTTCATATTAACGGGTTAACTGATATGGAATGTACTCAAACTGTAATGAAAGTATCTTTGCAACCTTCCCAACAAGTCGTAGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAAGAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCTGGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCAAGCACATATTGAGCGAATACTACACGACCATTTCCTCTTCAGGAAGCTCACTGACTCACAGTGCCATGTTTTACTTGATTGCATGCAAAGAGTTGAGGTGAAAGCTGGGGATATAGTGGTGCAGCAGGGCGGTGAAGGCGAGTGCTTCTATGTAGTTGGGAGTGGTGAGTTTGAAGTGCTAGCCATTCAGGAAGAAGATGGAAAGGAAGTTACAAAGGTTCTACATCGGTATACTGCTGACAAACTATCTTCTTTTGGGGAGCTAGCACTAATGTATAATAAACCACTTCAAGCTTCAGTCCGTGCTGTGACTACTGGAACTTTATGGGCTCTAAAGCGAGAGGATTTTCGGGGAATTCTGATGTCAGAGTTTTCAAATATACCATCATTAAAGTTGCTCCGATCAGTGGAGCTGTTTACGAGATTGACAATGCTTCAACTAAGTCAACTTGCTGATTCTCTTGTTGAAGTAACTTTTGGGGATGGTCAAATGATAGTAGACAAGAATGATGATGCATCTTCCTTGTATATTATTCAAAGAGGTCGTGTGAAACTTAAATTGGCTGCAGATCAGGTAAATTCAGATGCCTGGGATCTTCTTAGTTCTCAAACAGAGGTGGCCCAATCAAGTCGAGAAGATGGTAATTACGTGTTTGAGATAGATGAAGGGGGACACTTTGGAGAGTGGGCTCTCTTTGGGGAGACAATTGCTTTTACTGCTATGTCAGTTGGTGATGTGACTTGTTCTACTATTGCAAAGGAGAAGTTTGACTCAATTATTGGGCCCTTGCCAAAAGTTTCCCAGTCTGATTCCAAGCTCAAAGATTCCTTGGTTCCTAAAGGGCATGGTGCAGATGATAGTTCCTTCAGGAAGGCGCAGCTATCTGATTT-------GGAATGGAAAATGTGCATATATGCCGCTGATTGCAGTGAGATTGGTCTTGTCCAACTAAGAGGTTCTGACAAGATCAAAAGCTTAAAGAGGTTTTACATCAAGAGAGTAAAAGACCTTCATAAGGAAAAACACGTATTTGATGAGAAGGATCTCATGAAATCTTTGAGCCAATCAACTTGTGTGCCAGAAGTTCTATGTACTTGCGCTGATCAATCCTACCTAGGAATACTGCTGAATTGTTGCCTTTGTTGCTCACTGGCTTCAATACTTCATGCACCACTAAATGAGTCGTCTGCACGATTCTATGTAGCCTCTGTCGTCGTAGCGCTAGAAAATCTCCATCAGAGGTCCATTCTTTACAGAGGTGTTTCTGCAGACATTCTTATGGTCGACCGATCAGGGCATCTTCAACTAGTTGACTTCAGGTTTGCAAAGAAGTTGCAAGGTGAAAGGACTTACACAATATGTGGGATTGCCGACTCTCTAGCTCCAGAGATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGTGTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACTGGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAGCATCGAAGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAAAATGCGCGCCTTGGGGCCAAGGGAGCGGAATCTGTGAAAAGACACCCCTGGTTTGATGGCATTGACTGGAAACAAATAGCAGATGGTACTTATACAGTACCCCAAGAAATCACCGATCGTGTCGACAGCTATGTAGAAACTCTTACAGAGGACTTGACAGCATCCCCTTCCAT-GCCA-AGTGAAGAAACAGCTGATCAGGCTGCTCCAGAATGGATCCAGGATTGGTGATCTCA-GTTGCTGCATGAACAAAAAGATGTTTGGGAAAACTTGTTTAGCATTTCA-AATGAAAAAAAAAACGGGTACATACA-TGATTACA-GCATGTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACAATTCTGTATAGAGGAATCATCAGCTCAACCTGCAACCATCTGATGGATATGCTAGCAAAAATGTGAAAAATGGTGTTGCAGTAGTTCAAGCA-GGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATATGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTAT-TATTCATCTGTAGGTGAAAATTATAACTGCCTACCTATGTAATTTTGTATAACATTTTGATAAGAAAACCGGGGCCATGTGTCAAAAAAAAAA]
[+] EMBL AK068697 [ACCACCTCCTCTCCTCTCCTCTCCTCTCCTTCTTCCTCTTCCCCTGCACTGCACTGCCACTGCATTAATCCCCTTCACCGATTCCTCCTCTCCTCTCCTCCACCTCCACCTCCACCGCACGCACCAAACCGCAGTTTCTCTCTCTCTCCCTTTCGCTGTTCCTGTGTGCCTTGCTTAGCTGCCGCTTTCCTCTCTCCCTCCCTCTCTTTCTTTCTTCCTCTCTCTGCTCAACCTCACAAAAATTCCCCCCTTTTGCTCTTTCTCTTTCTTTCCTCCCCGATCGACTTCTTCTTCTTCTTCACCTTCTCCAGTTCTCCTCATCCGTCTTCGGCGATCTTTGCCGCTGTGAACATTTGACAGTTTACAGGTTCCTCCATTTCAGTTGTTGGATTAAGAAAGAGGCTTTATGCTTTATAAATAAGTAAGCATCATCATCAATATAAGTTGTGGCTGCTCTTAAAGATCCTCAGATTCTGTACAAGTTCAGAGCTTCCTCTGTTTGGCAGTGTCAGTACACGTGCTTGCATAGTTCATAACTGGGGTGGAGATATCTTAGTTTCATGTTCTTTGTGCTTCTTGGCTCTTACCCAGCTGGTTTAACATCTGATGGGCTGCTCACCTTCTAAGGTGTGTTCATGTCCACATTATAAGGGCAGTTTGTGCTTCTGTGACTGTGGATGCTTTGGACAAACACCTGACTCCCCAAGAGAGTCAAGGGGAAAATCAAACCGGGTTAGGGGAAAGACAGATTCTAGTGCTTCAGATGCTTCTTCTGATGACCTAGAGGAAGATGATGATGGATTGCACCAAATGAACATTACAAGGGACTCTAATGTTGGTATCAATCGACTCTCAAGGGTCTCATCACAATTTCTTCCACCAGAAGGTTCACGTAAAGTTCGAATCCCATTGGGGAATTATGACCTGAGATATTCCTACTTGTCTCAAAGAGGCTACTACCCAGAATCATTGGACAAGCCAAACCAAGACAGTTTTTGTATACATACTCCATTTGGAACAAGCCCTGATGACCATTTCTTTGGTGTATTTGATGGCCATGGAGAATATGGAGCTCAGTGCTCACAATTTGTAAAGCGAAGACTATGCGAAAACCTGCTCAGAGATGACCGGTTCCGTACTGATGTTGTTCAGGCTCTTCATTCTGCTTTCTTGGCAACAAATTCACAGCTTCATGCAGACAGCTTAGATGATTCTATGAGTGGTACTACTGCAGTCACTGTGCTGGTGAGGGGTAAAACTATTTACATTGCGAATACGGGTGATTCACGTGCTGTTATTGCCGAAAAAAAGAGGGGAAGATGTTGTTGCTGTTGACCTGTCCATAGATCAAACACACTACAGGACTGATGAGCTTGAAAGGGTCAAGGAGTGTGGTGCTAGGGTTATGACGTTGGATCAGATAGAGGGGCTAAAGAACCCAGATGTACAGTGTTGGGGCACCGAGGAAAGTGATGACGGTGATCCTCCAAGGTTGTGGGTGCAAAATGGCATGTATCCAGGAACTGCTTTTACTCGCAGCATTGGAGATTCTGTCGCTGAATCTATCGGTGTTGTCGCTAATCCTGAGATTTTTATCCTGGAGCTCAATGCCAACCATCCATTCTTTGTTCTTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGTCAAACTGTTGTCGACATGATTGCTAAATACAAGGATCCTCGTGATGCGTGCGCTGCAATTGTTGCTGAATCCTATCGCCTCTGGCTACAGTATGAAACTCGTACAGATGACATTACAATAATAGTTGTTCATATTAACGGGTTAACTGATATGGAATGTACTCAAACTGTAATGAAAGTATCTTTGCAACCTTCCCAACAAGTCGTAGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAAGAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCTGGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCAAGCACATATTGAGCGAATACTACACGACCATTTCCTCTTCAGGAAGCTCACTGACTCACAGTGCCATGTTTTACTTGATTGCATGCAAAGAGTTGAGGTGAAAGCTGGGGATATAGTGGTGCAGCAGGGCGGTGAAGGCGAGTGCTTCTATGTAGTTGGGAGTGGTGAGTTTGAAGTGCTAGCCATTCAGGAAGAAGATGGAAAGGAAGTTACAAAGGTTCTACATCGGTATACTGCTGACAAACTATCTTCTTTTGGGGAGCTAGCACTAATGTATAATAAACCACTTCAAGCTTCAGTCCGTGCTGTGACTACTGGAACTTTATGGGCTCTAAAGCGAGAGGATTTTCGGGGAATTCTGATGTCAGAGTTTTCAAATATACCATCATTAAAGTTGCTCCGATCAGTGGAGCTGTTTACGAGATTGACAATGCTTCAACTAAGTCAACTTGCTGATTCTCTTGTTGAAGTAACTTTTGGGGATGGTCAAATGATAGTAGACAAGAATGATGATGCATCTTCCTTGTATATTATTCAAAGAGGTCGTGTGAAACTTAAATTGGCTGCAGATCAGGTAAATTCAGATGCCTGGGATCTTCTTAGTTCTCAAACAGAGGTGGCCCAATCAAGTCGAGAAGATGGTAATTACGTGTTTGAGATAGATGAAGGGGGACACTTTGGAGAGTGGGCTCTCTTTGGGGAGACAATTGCTTTTACTGCTATGTCAGTTGGTGATGTGACTTGTTCTACTATTGCAAAGGAGAAGTTTGACTCAATTATTGGGCCCTTGCCAAAAGTTTCCCAGTCTGATTCCAAGCTCAAAGATTCCTTGGTTCCTAAAGGGCATGGTGCAGATGATAGTTCCTTCAGGAAGGCGCAGCTATCTGATTT GGAATGGAAAATGTGCATATATGCCGCTGATTGCAGTGAGATTGGTCTTGTCCAACTAAGAGGTTCTGACAAGATCAAAAGCTTAAAGAGGTTTTACATCAAGAGAGTAAAAGACCTTCATAAGGAAAAACACGTATTTGATGAGAAGGATCTCATGAAATCTTTGAGCCAATCAACTTGTGTGCCAGAAGTTCTATGTACTTGCGCTGATCAATCCTACCTAGGAATACTGCTGAATTGTTGCCTTTGTTGCTCACTGGCTTCAATACTTCATGCACCACTAAATGAGTCGTCTGCACGATTCTATGTAGCCTCTGTCGTCGTAGCGCTAGAAAATCTCCATCAGAGGTCCATTCTTTACAGAGGTGTTTCTGCAGACATTCTTATGGTCGACCGATCAGGGCATCTTCAACTAGTTGACTTCAGGTTTGCAAAGAAGTTGCAAGGTGAAAGGACTTACACAATATGTGGGATTGCCGACTCTCTAGCTCCAGAGATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGTGTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACTGGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAGCATCGAAGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAAAATGCGCGCCTTGGGGCCAAGGGAGCGGAATCTGTGAAAAGACACCCCTGGTTTGATGGCATTGACTGGAAACAAATAGCAGATGGTACTTATACAGTACCCCAAGAAATCACCGATCGTGTCGACAGCTATGTAGAAACTCTTACAGAGGACTTGACAGCATCCCCTTCCAT GCCA AGTGAAGAAACAGCTGATCAGGCTGCTCCAGAATGGATCCAGGATTGGTGATCTCA GTTGTTGCATGAACAAAAAGATGTTTGGGAAAACTTGTTTAGCATTTCA AATGAAAAAAAAAACGGGTACATACA TGATTACA GCATGTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACAATTCTGTATAGAGGAATCATCAGCTCAACCTGCAACCATCTGATGGATATGCTAGCAAAAATGTGAAAAATGGTGTTGCAGTAGTTCAAGCA GGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATATGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTAT TATTCATCTGTAGGTGAAAATTATAACTGCCTACCTATGTAATTTTGTATA ]
[+] EMBL CB662633 [ aGAAGGCGCACCTATCTGATTTGGTACGGGGAATGGAAAATGTGCATATATGCCGCTGATTGCATTGAGATTGGTCTTGTCCAACTAAGAGGTGCTGACAACATCAAAAGCTTAAAGAGGTTTTACATCAAGAGAGTAAAAGACCTTCATAAGGAAAAACACGTATTTGATGAGAAGGATCTCATGAAATCTTTGAGCCAATCAACTTGTGTGCCACAAGTTCTATGTACTTGCGCTGATCAATCCTACCTACGAATACTGCTGAATTGTTGCCTTTGTTGCTCACTGGCTTCAATACTTCATGCACCACTAAATGAGTCTTCTGCACGATTCTATGCAGCCTCTGTCGTCGTAGCGCTAGAAAATCTCCATCACAGGTCCATTCTTTACAGAGGTGTTTCTGCAGACATTCTTATGGTCGACCGATCAAGGCATCTTCAACTATTTGACTTCAAGTTTGCAAAGAATTTGCAATGTGAAAGGACTTACACCATATGTGGGATTGCCGACTCTCTAACTCCAGATATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGTGTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACTGGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAACATCGAAGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAg ]
[-] EMBL CB662597 [ TGCAAGGTGAAAGGACTTACACAATATGTGGGATTGCCGACTCTCTAGCTCCAGAGATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGTGTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACTGGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAGCATNGAAGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAAAATGCGCGCCTTGGGGCCAAGGGAGCGGAATCTGTGAAAAGACACCCCTGGTTTGATGGCATTGACTGGAAACAAATAGCAGATGGTACTTATACAGTACCCCAAGAAATCACCGATCGTGTCGACAGCTATGTAGAAACTCTTACAGAGGACTTGACAGCATCCCCTTCCAT GCCA AGTGAAGAAACAGCTGATCAGGCTGCTCCAGAATGGATCCAGGATTGGTGATCTCA GTTGCTGCATGAACAAAAAGATGTTTGGGAAAACTTGTTTAGCATTTCA AATGAAAAAAAAAACGGGTACATACA TGATTACA GCATGTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACAATTCTGTATAGAGGAATCATCAGCTCAACCTGCAACCATCTGATGGATATGCTAGCAAAAATGTGAAAAATGGTGTTGCAGTAGTTCAAGCA GGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATATGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTATATAGGCATCTGTAGGTGAAAATTATAACTGCCTACCTAT ]
[-] EMBL CB662598 [ CTCTCTAGCTCCAGAGATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGTGTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACTGGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAGCATCGAAGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAAAATGCGCGCCTTGGGGCCAAGGGAGCGGAATCTGTGAAAAGACACCCCTGGTTTGATGGCATTGACTGGAAACAAATAGCAGATGGTACTTATACAGTACCCCAAGAAATCACCGATCGTGTCGACAGCTATGTAGAAACTCTTACAGAGGACTTGACAGCATCCCCTTCCAT GCCA AGTGAAGAAACAGCTGATCAGGCTGCTCCAGAATGGATCCAGGATTGGTGATCTCA GTTGCTGCATGAACAAAAAGATGTTTGGGAAAACTTGTTTAGCATTTCA AATGAAAAAAAAAACGGGTACATACA TGATTACA GCATGTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACAATTCTGTATAGAGGAATCATCAGCTCAACCTGCAACCATCTGATGGATATGCTAGCAAAAATGTGAAAAATGGTGTTGCAGTAGTTCAAGCA GGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATATGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTAT TATTCATCTGTAGGTGAAAATTATAACTGCCTACCTATGTA ]
[+] EMBL BI812387 [ TTCCATGGCCACAGTGAAGAAACAGCTGATCAGGCTGCTCCAGAAT GATCCAGGATTGGTGATCTCACGTTGCTGCATGAAC AAAAGATGTTTGGGAAAACTTGTTTAGCATTTCACAATG AAAAAAAAACGGGTACATACACTGATTACACGCATGTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACCATTCTGTATAGAGGAATCATCAGCTCAACCTGCAACCATCTGATGGATATGCTAGCCAAAATGTGAAAAATGGTGTTGCAGTAGTTCAAGCACGGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATATGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTAT TATTCATCTGTAGGTGAAAATTATAACTGCCTACCTATGTAATTTTGTATAACATTTTGATAAGAAAACCGGGGCCATGTGTCAAAAAAAAAA]
consensusID : consensus_9765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence
[AGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAAGAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCTGGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCAAGTAAGGTCACCAATTTCCATCACTGTTGAACTTTGTATTAGTTCAGGAGTTCTTGATATCCTATTA]
[+] EMBL AK062696 [AGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAAGAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCTGGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCAAGTAAGGTCACCAATTTCCATCACTGTTGAACTTTGTATTAGTTCAGGAGTTCTTGATATCCTATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9765#0 ACCACCTCCTCTCCTCTCCTCTCCTCTCCTTCTTCCTCTTCCCCTGCACTGCACTGCCAC 60
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGCATTAATCCCCTTCACCGATTCCTCCTCTCCTCTCCTCCACCTCCACCTCCACCGCAC 120
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GCACCAAACCGCAGTTTCTCTCTCTCTCCCTTTCGCTGTTCCTGTGTGCCTTGCTTAGCT 180
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GCCGCTTTCCTCTCTCCCTCCCTCTCTTTCTTTCTTCCTCTCTCTGCTCAACCTCACAAA 240
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AATTCCCCCCTTTTGCTCTTTCTCTTTCTTTCCTCCCCGATCGACTTCTTCTTCTTCTTC 300
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ACCTTCTCCAGTTCTCCTCATCCGTCTTCGGCGATCTTTGCCGCTGTGAACATTTGACAG 360
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TTTACAGGTTCCTCCATTTCAGTTGTTGGATTAAGAAAGAGGCTTTATGCTTTATAAATA 420
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGTAAGCATCATCATCAATATAAGTTGTGGCTGCTCTTAAAGATCCTCAGATTCTGTACA 480
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGTTCAGAGCTTCCTCTGTTTGGCAGTGTCAGTACACGTGCTTGCATAGTTCATAACTGG 540
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGTGGAGATATCTTAGTTTCATGTTCTTTGTGCTTCTTGGCTCTTACCCAGCTGGTTTAA 600
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CATCTGATGGGCTGCTCACCTTCTAAGGTGTGTTCATGTCCACATTATAAGGGCAGTTTG 660
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGCTTCTGTGACTGTGGATGCTTTGGACAAACACCTGACTCCCCAAGAGAGTCAAGGGGA 720
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AAATCAAACCGGGTTAGGGGAAAGACAGATTCTAGTGCTTCAGATGCTTCTTCTGATGAC 780
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CTAGAGGAAGATGATGATGGATTGCACCAAATGAACATTACAAGGGACTCTAATGTTGGT 840
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ATCAATCGACTCTCAAGGGTCTCATCACAATTTCTTCCACCAGAAGGTTCACGTAAAGTT 900
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CGAATCCCATTGGGGAATTATGACCTGAGATATTCCTACTTGTCTCAAAGAGGCTACTAC 960
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CCAGAATCATTGGACAAGCCAAACCAAGACAGTTTTTGTATACATACTCCATTTGGAACA 1020
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGCCCTGATGACCATTTCTTTGGTGTATTTGATGGCCATGGAGAATATGGAGCTCAGTGC 1080
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TCACAATTTGTAAAGCGAAGACTATGCGAAAACCTGCTCAGAGATGACCGGTTCCGTACT 1140
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GATGTTGTTCAGGCTCTTCATTCTGCTTTCTTGGCAACAAATTCACAGCTTCATGCAGAC 1200
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGCTTAGATGATTCTATGAGTGGTACTACTGCAGTCACTGTGCTGGTGAGGGGTAAAACT 1260
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ATTTACATTGCGAATACGGGTGATTCACGTGCTGTTATTGCCGAAAAAAAGAGGGGAAGA 1320
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGTTGTTGCTGTTGACCTGTCCATAGATCAAACACACTACAGGACTGATGAGCTTGAAAG 1380
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGTCAAGGAGTGTGGTGCTAGGGTTATGACGTTGGATCAGATAGAGGGGCTAAAGAACCC 1440
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGATGTACAGTGTTGGGGCACCGAGGAAAGTGATGACGGTGATCCTCCAAGGTTGTGGGT 1500
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GCAAAATGGCATGTATCCAGGAACTGCTTTTACTCGCAGCATTGGAGATTCTGTCGCTGA 1560
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ATCTATCGGTGTTGTCGCTAATCCTGAGATTTTTATCCTGGAGCTCAATGCCAACCATCC 1620
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ATTCTTTGTTCTTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGTCAAACTGTTGTCGA 1680
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CATGATTGCTAAATACAAGGATCCTCGTGATGCGTGCGCTGCAATTGTTGCTGAATCCTA 1740
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TCGCCTCTGGCTACAGTATGAAACTCGTACAGATGACATTACAATAATAGTTGTTCATAT 1800
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TAACGGGTTAACTGATATGGAATGTACTCAAACTGTAATGAAAGTATCTTTGCAACCTTC 1860
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CCAACAAGTCGTAGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAA 1920
consensus_9765#1 ------------AGAATTGGTAGGCTCAGAATCACCATCGACAATAAGTTTGAATCCCAA 48
************************************************
consensus_9765#0 GAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCT 1980
consensus_9765#1 GAACCAGCGTTCCAGGCAAGATCTATCACGTGCTCGGCTGAGAGCACTTGAAAGTTCCCT 108
************************************************************
consensus_9765#0 GGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCA 2040
consensus_9765#1 GGAAAATGGTCGACTATGGGTCCCTCCATCCCCATCGCATCGGAAGACATGGGAAGAGCA 168
************************************************************
consensus_9765#0 AGCACATATTGAGCGAATACTACACGACCATTTCCTCTTCAGGAAGCTCACTGACTCACA 2100
consensus_9765#1 AGTA-AGGTCA--CCAAT-TTCCATCACTGTTGAACTTTGTATTAGTTCAGGAGTTCTTG 224
** * * * * *** * ** ** ** ** ** *** **
consensus_9765#0 GTGCCATGTTTTACTTGATTGCATGCAAAGAGTTGAGGTGAAAGCTGGGGATATAGTGGT 2160
consensus_9765#1 ATATCCTATTA------------------------------------------------- 235
* * * **
consensus_9765#0 GCAGCAGGGCGGTGAAGGCGAGTGCTTCTATGTAGTTGGGAGTGGTGAGTTTGAAGTGCT 2220
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGCCATTCAGGAAGAAGATGGAAAGGAAGTTACAAAGGTTCTACATCGGTATACTGCTGA 2280
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CAAACTATCTTCTTTTGGGGAGCTAGCACTAATGTATAATAAACCACTTCAAGCTTCAGT 2340
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CCGTGCTGTGACTACTGGAACTTTATGGGCTCTAAAGCGAGAGGATTTTCGGGGAATTCT 2400
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GATGTCAGAGTTTTCAAATATACCATCATTAAAGTTGCTCCGATCAGTGGAGCTGTTTAC 2460
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GAGATTGACAATGCTTCAACTAAGTCAACTTGCTGATTCTCTTGTTGAAGTAACTTTTGG 2520
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGATGGTCAAATGATAGTAGACAAGAATGATGATGCATCTTCCTTGTATATTATTCAAAG 2580
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGGTCGTGTGAAACTTAAATTGGCTGCAGATCAGGTAAATTCAGATGCCTGGGATCTTCT 2640
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TAGTTCTCAAACAGAGGTGGCCCAATCAAGTCGAGAAGATGGTAATTACGTGTTTGAGAT 2700
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGATGAAGGGGGACACTTTGGAGAGTGGGCTCTCTTTGGGGAGACAATTGCTTTTACTGC 2760
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TATGTCAGTTGGTGATGTGACTTGTTCTACTATTGCAAAGGAGAAGTTTGACTCAATTAT 2820
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGGGCCCTTGCCAAAAGTTTCCCAGTCTGATTCCAAGCTCAAAGATTCCTTGGTTCCTAA 2880
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGGGCATGGTGCAGATGATAGTTCCTTCAGGAAGGCGCAGCTATCTGATTTGGAATGGAA 2940
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AATGTGCATATATGCCGCTGATTGCAGTGAGATTGGTCTTGTCCAACTAAGAGGTTCTGA 3000
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CAAGATCAAAAGCTTAAAGAGGTTTTACATCAAGAGAGTAAAAGACCTTCATAAGGAAAA 3060
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ACACGTATTTGATGAGAAGGATCTCATGAAATCTTTGAGCCAATCAACTTGTGTGCCAGA 3120
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGTTCTATGTACTTGCGCTGATCAATCCTACCTAGGAATACTGCTGAATTGTTGCCTTTG 3180
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TTGCTCACTGGCTTCAATACTTCATGCACCACTAAATGAGTCGTCTGCACGATTCTATGT 3240
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGCCTCTGTCGTCGTAGCGCTAGAAAATCTCCATCAGAGGTCCATTCTTTACAGAGGTGT 3300
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TTCTGCAGACATTCTTATGGTCGACCGATCAGGGCATCTTCAACTAGTTGACTTCAGGTT 3360
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGCAAAGAAGTTGCAAGGTGAAAGGACTTACACAATATGTGGGATTGCCGACTCTCTAGC 3420
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TCCAGAGATAGTTCTTGGTAGGGGCCATGGATTTTCTGCTGACTGGTGGGCGCTGGGAGT 3480
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GTTGATTTATTTCATGCTGCAATCAGACATGCCATTTGGCTCTTGGAGGGAGAGTGAACT 3540
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGAACCTTTTGCAAAGATTGCCAAGGGTCACCTTGTCATGCCATCAACATTCAGCATCGA 3600
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGTTGTTGACCTTATTACAAAGCTACTCGAGGTAAACGAAAATGCGCGCCTTGGGGCCAA 3660
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGGAGCGGAATCTGTGAAAAGACACCCCTGGTTTGATGGCATTGACTGGAAACAAATAGC 3720
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGATGGTACTTATACAGTACCCCAAGAAATCACCGATCGTGTCGACAGCTATGTAGAAAC 3780
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TCTTACAGAGGACTTGACAGCATCCCCTTCCATGCCAAGTGAAGAAACAGCTGATCAGGC 3840
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGCTCCAGAATGGATCCAGGATTGGTGATCTCAGTTGCTGCATGAACAAAAAGATGTTTG 3900
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GGAAAACTTGTTTAGCATTTCAAATGAAAAAAAAAACGGGTACATACATGATTACAGCAT 3960
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 GTGAATTTTTGTCGAAATGGTGGATTATACGTAGCAACAATTCTGTATAGAGGAATCATC 4020
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 AGCTCAACCTGCAACCATCTGATGGATATGCTAGCAAAAATGTGAAAAATGGTGTTGCAG 4080
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TAGTTCAAGCAGGAGCCAGAACTGGTCTGCAGGGAGAACTAATGATTCCTGTGGTACATA 4140
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 TGTATAGACCCTTCTTTCATTTGTAAATTTATTTGTATTATTCATCTGTAGGTGAAAATT 4200
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 ATAACTGCCTACCTATGTAATTTTGTATAACATTTTGATAAGAAAACCGGGGCCATGTGT 4260
consensus_9765#1 ------------------------------------------------------------
consensus_9765#0 CAAAAAAAAAA 4271
consensus_9765#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||