These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1377 fasta sequence [CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGG-TTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATAT--------AGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCAAGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACTACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGAGATTAACAGTGGTAAATTCNNCAAAAAA] [+] EMBL CF278810 [CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGG TTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATAT AGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCAT ] [+] EMBL AK066553 [ GCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTC TCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATGTATGTAGAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCCGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAA ] [+] EMBL CA767356 [ GTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAACTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGAT AAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCT ] [-] EMBL CF278811 [ AGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCAAGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACTACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGAGATTAACAGTGGTAAATTCNNCAAAAAA] consensusID : consensus_9766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCATGATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT] [+] EMBL CB677622 [CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCATGATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT] consensusID : consensus_9766#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TCTCTTGGTATATCCCTGCTGTAGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGACAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCCAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCACAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA] [+] EMBL BI812443 [TCTCTTGGTATATCCCTGCTGTAGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGACAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCCAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCACAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9766#0 CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCC 60 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACT 120 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GAGATAGGGTAACTGAGATTAGGGTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGG 180 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 AGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGAT 240 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 TGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAA 300 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACA 360 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAG 420 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGA 480 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 AATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACT 540 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------------------------------------------------------ consensus_9766#0 GTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTAC 600 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 ------------CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAG 48 consensus_9766#0 TCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAA 660 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 CATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGG 108 consensus_9766#0 AAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTG 720 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 AGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGG 168 consensus_9766#0 AACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGG 780 consensus_9766#2 ----------------------------------------------------TCTCTTGG 8 consensus_9766#1 CTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGG 228 ** ** consensus_9766#0 T-TATGCCTGCTGT---AGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATC 836 consensus_9766#2 TATATCCCTGCTGT---AGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATC 65 consensus_9766#1 GATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGAT 288 * * * ** ** * * ** * ** * * ** * * * consensus_9766#0 AAACCTCAATTTGAAGCTCGTCGATCTCA-GGTAGGAGGTGGTG--------GGATTGTT 887 consensus_9766#2 AAACCTCAATTTGAAGCTCGTCGATCTCA-GGTAGGAGGTGGTG--------GGATTGTT 116 consensus_9766#1 GAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTT 348 ** **** ** * * * **** ** ***** ** consensus_9766#0 CGGGACC---CTCTGGTTCATAAAGAGGTGCTAGATAGGAT--AATTTCAGGCGTAGAGC 942 consensus_9766#2 CGGGACC---CTCTGGTTCATAAAGAGGTGCTAGATAGGAT--AATTTCAGGCGTAGA-C 170 consensus_9766#1 CAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGAC 408 * ** ** ** ** * *** * *** * ** * * * consensus_9766#0 AGTTTGGATTCTGCAACAAGGGCTGGATT----GAATCT--CCGATAAAGGGCGCGGAAG 996 consensus_9766#2 AGTTTGGATTCTGCAACAAGGGCTGGATT----GAATCT--CCGATAAAGGGCGCGGAAG 224 consensus_9766#1 AAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGC 468 * * * * ** * ***** * * *** * * * * * ** * consensus_9766#0 GGA-ACA-AAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGA 1054 consensus_9766#2 GGA-ACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGA 283 consensus_9766#1 GGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATC 528 ** * **** *** * * ** ** * ** * ** * * consensus_9766#0 GGAAGCAAAGTCAACATGATTATTTGTACCTA-ATGCCATATCTAGTTCACATAGAATAG 1113 consensus_9766#2 GGAAGCCAAGTCAACATGATTATTTGTACCTA-ATGCCATATCTAGTTCACATAGAATAG 342 consensus_9766#1 CACTGGCGGTTTTAC-TGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTG 587 * * ** *** * *** ** * *** *** * * ** * * * consensus_9766#0 CTGGAGAATACTTTCTGATCTTTTTACCA---AGGATGTTACTTCAAATTGGCATAATGT 1170 consensus_9766#2 CTGGAGAATACTTTCTGATCTTTTTACCAC--AGGATGTTACTTCAAATTGGCATAATGT 400 consensus_9766#1 ATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTG 647 ** * ** * * * * * * * ** * ** **** consensus_9766#0 GATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAA 1230 consensus_9766#2 GATGTGAGAATCCCTTTTGCA-TGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAA 459 consensus_9766#1 AACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGG 707 * ** *** * * ** ** * * ** * ** consensus_9766#0 AACCA-AGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACT 1289 consensus_9766#2 AACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA------------------------- 494 consensus_9766#1 ATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCAT 767 * * * * ** * consensus_9766#0 ACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGA 1349 consensus_9766#2 ------------------------------------------------------------ consensus_9766#1 GATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT--------- 818 consensus_9766#0 GATTAACAGTGGTAAATTCNNCAAAAAA 1377 consensus_9766#2 ---------------------------- consensus_9766#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||