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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1702 fasta sequence
[GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAGATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGCACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAATGCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGGTAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACTTATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGTGGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC-CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT]
[+] EMBL AK060620 [GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAGATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGCACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAATGCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGGTAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACTTATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGTGGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT]
[+] EMBL CA755906 [ TAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGGCAGGGTGGCAAGAAGAANACGAAGAAAGGAAAACAGAT ]
[-] EMBL CF294374 [ TCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTTTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCAGCAAGGGTGCAAAGAAGAAAAaa ]
[+] EMBL CB679853 [ TGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAAGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT]
[+] EMBL BI812857 [ TCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCCACCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACNGTGCCAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAAaaaaaaaa ]
consensusID : consensus_9771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCA]
[+] EMBL CF294373 [GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9771#0 GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAG 60
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 ATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGC 120
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 ACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAAT 180
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 GCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGG 240
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACT 300
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGT 360
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 GGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAG 420
consensus_9771#1 ------GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAG 54
* ** ** * * **** * * ************************
consensus_9771#0 GAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATC 480
consensus_9771#1 GAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATC 114
************************************************************
consensus_9771#0 TCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCT 540
consensus_9771#1 TCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCT 174
******************************* ****************************
consensus_9771#0 CTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGA 600
consensus_9771#1 CTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGA 234
************************************************************
consensus_9771#0 TGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGC 660
consensus_9771#1 TGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGC 294
************************************************************
consensus_9771#0 AGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATC 720
consensus_9771#1 AGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATC 354
************************************************************
consensus_9771#0 AAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATT--ATGGGGGGT 778
consensus_9771#1 AAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGT 414
************************************************ *******
consensus_9771#0 GGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAG 838
consensus_9771#1 GGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAG 474
************************************************************
consensus_9771#0 GGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAAC 898
consensus_9771#1 GGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAAC 534
************************************************************
consensus_9771#0 TGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGC 958
consensus_9771#1 TGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGC 594
************************************************************
consensus_9771#0 CAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAG 1018
consensus_9771#1 CAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAG 654
************************************************************
consensus_9771#0 AAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCA 1078
consensus_9771#1 AAAGCAGGCCATGCGTCTTCTGATGATCA------------------------------- 683
*****************************
consensus_9771#0 GCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCA 1138
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCG 1198
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 GCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCA 1258
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 AAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCAC 1318
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 AGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGC 1378
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 GCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACAT 1438
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTC 1498
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 ATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTT 1558
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TCTTTTTCTTTCCCCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGT 1618
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 ACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTT 1678
consensus_9771#1 ------------------------------------------------------------
consensus_9771#0 TTGTCCTTTTAATCGATGGTCTCT 1702
consensus_9771#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||