These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1702 fasta sequence [GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAGATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGCACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAATGCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGGTAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACTTATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGTGGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC-CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT] [+] EMBL AK060620 [GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAGATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGCACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAATGCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGGTAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACTTATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGTGGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT] [+] EMBL CA755906 [ TAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATTATGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGGCAGGGTGGCAAGAAGAANACGAAGAAAGGAAAACAGAT ] [-] EMBL CF294374 [ TCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTTTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCAGCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCAGCAAGGGTGCAAAGAAGAAAAaa ] [+] EMBL CB679853 [ TGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAAGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCC CCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAATCGATGGTCTCT] [+] EMBL BI812857 [ TCATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCCACCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGTACAGGACNGTGCCAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTTTTGTCCTTTTAAaaaaaaaa ] consensusID : consensus_9771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCA] [+] EMBL CF294373 [GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAGGAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATCTCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCTCTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGATGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGCAGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATCAAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGTGGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGCCAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAGAAAGCAGGCCATGCGTCTTCTGATGATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9771#0 GAGCTTGTCTTTGCATGAGCGGTTGCATAGAGGAGGTCAAGGTATCCACTCCCTTGAGAG 60 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 ATCTGGCTCTTTGCCTGGTGGCGCTCCTCTACCTAACCTGGATGTTGTAAATTCCCTAGC 120 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 ACGCCATCATGGCATTGGTCAGTTAGAAACACATGGAGATTTGTATTCTCTAGGACAAAT 180 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 GCCTATGGTTCCTTCAGGGGTTCATCCGCAGCAACACAGGCTTCAGGAACAGCTTTCTGG 240 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TAACTTGGCAAGGCTGGATAGGCACTGGTCAGATGCCAATGGACAGTTGCAAAACACACT 300 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TATGGAACCTTCACGCATCAGCCAGATGCAAATGGAAGCACAGAAACAGCGAAGGAATGT 360 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 GGAAATGAACCTTGCCGTTGACAATTCACATGCATGGGCATCACTTAGGAACAACGAGAG 420 consensus_9771#1 ------GGACACTGACATGGACAGAAGGAGTAGAAAGGCATCACTTAGGAACAACGAGAG 54 * ** ** * * **** * * ************************ consensus_9771#0 GAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATC 480 consensus_9771#1 GAGCACAGAGCAAGATTTGAGCGACTTGTTCCATCAAAAACTAGTTCAGTCACAACAATC 114 ************************************************************ consensus_9771#0 TCGTGGTTATCCTGATGTTCCAGTACCGGCATCCTTTGGACGTAAAGACCCTTCATCGCT 540 consensus_9771#1 TCGTGGTTATCCTGATGTTCCAGTACCGGCACCCTTTGGACGTAAAGACCCTTCATCGCT 174 ******************************* **************************** consensus_9771#0 CTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGA 600 consensus_9771#1 CTTTGCACAGCCTGCTGCAGATAACCCTTTAAGATCACCTGCGGACAGGTTGTCTTTTGA 234 ************************************************************ consensus_9771#0 TGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGC 660 consensus_9771#1 TGATCCTCTTGCAGAAAGGTCCCTTTTTGCTAAAGCTGGGCAGGCAGGACAAGAGGGAGC 294 ************************************************************ consensus_9771#0 AGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATC 720 consensus_9771#1 AGCAAATTTGGAGAGTTTGACTAGCAGTATTGAGAACAGTGGAAAGTTGGGCCTGAGATC 354 ************************************************************ consensus_9771#0 AAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATT--ATGGGGGGT 778 consensus_9771#1 AAGCTCAGGATCAATGCTTGATATGCAAAGGGGTGATTTTTCAGGTATATGGGGGGGGGT 414 ************************************************ ******* consensus_9771#0 GGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAG 838 consensus_9771#1 GGTGCATCAGGTAATCAATTGGTTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAG 474 ************************************************************ consensus_9771#0 GGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAAC 898 consensus_9771#1 GGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAAC 534 ************************************************************ consensus_9771#0 TGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGC 958 consensus_9771#1 TGGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCACCAAGC 594 ************************************************************ consensus_9771#0 CAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAG 1018 consensus_9771#1 CAACACGGTTCTGCAACTCAGGCATTGTCCACGGATATATCTTCAACCATTAGGCTGAAG 654 ************************************************************ consensus_9771#0 AAAGCAGGCCATGCGTCTTCTGATGATCATAAGTTGGAATCAGGAGGAGTCACCTCGGCA 1078 consensus_9771#1 AAAGCAGGCCATGCGTCTTCTGATGATCA------------------------------- 683 ***************************** consensus_9771#0 GCCCAACCTGTGGATATCCCTGTCTCCACTAACAAAGAGGCAGGCTCTTTCATCTCGCCA 1138 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAGAAGCCG 1198 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 GCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCA 1258 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 AAGAAGAAAACGAAGAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCAC 1318 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 AGCAACCGCATCATGATGGGTGAGATTCATCGCCTTGATGATTAACATGCATCTCTAGGC 1378 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 GCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGTAAACAT 1438 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTC 1498 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 ATTCCTTTAGCCATAGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTT 1558 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TCTTTTTCTTTCCCCCCTTGTGTATCTGTGGTGCCCTCAGGTTTTTACAGGAGAGATTGT 1618 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 ACAGGACAGTGCAAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAAGGACTTT 1678 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 TTGTCCTTTTAATCGATGGTCTCT 1702 consensus_9771#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||