These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 3086 fasta sequence [ATTGTGTGGGTGCGGCGGAGGAACGGGTCATGGTGGCCCGGCAGGATTCTGGGGCCCGACGAGCTGCCGCCGTCGCAGATCATGTCGCCAAGGTCCGGCACGCCGGTCAAGCTTCTCGGCCGTGAGGATGCCAGTGTCGACTGGTACAACATTGAAAAATCAAAGCGCGTCAAAGCATTTAGGTGTGGGGAGTTTGATGCATGTATTGAGAAGGCAGAGGCTACTGAAGGGACTTCTGTTAAGAAAAGAGAGAAGTATGCACGTAGAGAAGATGCTATTCTTCATGCTCTTGAATTGGAGAAGAAGCTGCTTGCATCAAAGCATCAGACTCAAGGTTCCAGACCTGCTAACGTTTCTGTTTGCTCTAAACATAACAAAGATCTTGGAAGTACCCGCTACAAGAGCAAAAAGAGTAAGAAACGGAAGGGCATAACTGCTTCTTCTGATATAAAAAAGGAAGCTGAGCAATATGTCCTCCATGCTGGCTCAAAGAGAAACTTTCAAGATTCTCCTACTCGGGGCATTTCTGATAATCTTTTTGGCAATCACTTGGGAGACATCTCGCATGTGAGGCATATACAGGCCGGAGAAAATTTGGATAGCAAGGAGAAAATCACAACTGCGGAAAAGATTAGATCAGATGGAAGTGATTTTGATGAATCTATTGAAAAATGTGACAGACGCCAACCTCTGGTTCAGATTTTGCACAGCAGTCCAAAATTGCCTCATCAGTCACAGCACAATGATGGCTATGGGGATGTCCTAACTCAGGGAGAAATGGATCGATCACCTGCCAATTACCGAGCTAAAAGAAGTAGATATGTATTCCTACCTACTGATTCTGGTGAAACTCATAGTCATAGTGATTTACCTTCCGTACAAGTGGCTTCTACAGGAGGTGATTTTGAGACTGAAAGTTATCTTCATCATCCTGCTTTTTCTGAGGAGCAGACATCTTCTGATCTTGTTGAGAAGCACATATATGAGTCTTCAGAGAGGGAATGCTCTGAGAGTGAGACAGAAGATGACGCTGAACTTTTACAATGTTCGGATTTGATTCTGCATCCAGCATCACATGCCCATGATCCTTATTTCTTACCAGCTTCTGACAAGTTCAGGCATGCGAATATTGATGCTGATGCTGATGAGCTGACCTATTCTTCTTATATGTGTCAAGTGAATGAATCAGAAGAGGATGGCTCTTCTGAGTTGGGCGTCTCCCAATGGCATATGAAAGGTAAACGTAATAGCCGTAATGCACCTAAGAGATCGGATATGGCAGATGGAAATCCCTGGTTAGACAAATCAGATGGTTTCATGGAAGGATCTCCGTATAAAATAAATGGTAGAAATCCCAGAGAAGGGAGTATGCAAATTCCCAATCAGCAATTGCTGGGGCAAAATTTTTACCAAAACGAAGAGGTCAATTACGATTCCGAAGAAACAGATTTTTTTGAGGACACAGGTCATTCAGAGGTTAACTTGTACCATGGTAGAACATATTCTTCATGTTTGAAGGCTACAAGAGATTTTAGCCGAAGCTACAGCTATTTTAACGACTATGGAAATGATTCTTCCAAGGTTTCTCCCCTAAACAGGGATTCAGATAAGATATTTCATTTTGATCGGAATGCATATTGGAGCGGACCCTCATTCTACCAAAAGTACAGTTCACGTCTTCGTGGCAGGGGCCCAATGTTGTTTGATGTTGACTTGAAGGTCCAGGCTAGCTACCAGGGAGAGCATGTTCCTCTTGTTTCCTTAATGAGCAGACTGAATGGCAAAGCAATTGTTGGGCATCCTGTTCAAATTGAAATACTTGAAGATGGTTCCACTGACCACCTGGTTTTTTGTGGTGATGTTAGTTTGGAAGGGAGAACTGGAGGGCAACCTGCTTGGTGTACAGGCAGGAGGACTGCCATGCAAAGAATTCCCCGATCTAACCCCTCAGGGGCATTGGATTGTGATGATGAAGGTACCCTTGCATATCCAGACTGGGAGATGAAACCAGATTTTAGAAAGTACTCAAATTCAGATTTTAGAAAGTACTCAAATTCAAATCATCAGGTTAAGGTTGATAAGAAAAGCATCTCAAATGTTAGGAGGCCGTCAGCCTCTAAATCTCAAAAGAAGCAATCCAAAAAAGCAAGCCTGTCAAGCCAGAAGGTCCGAACCCTCTCTTCCATTTCCACTGGAAAAAAGCATCATGGAGTAGGTGGTCAAGCAAAAGCACATAAGCAGAGTGGCATTTTTGGCGGCTTGATCAAACCAGGGGGAATTCCACTTGTCACATGTGTCCCTGCGAAGGTTGCCTTTACTAGGATACTGGAAGCTGTTGGCAGGCCGCCCCTGGCTGTTGCTCACCGTGTTAGAATGGCTAGTCCTGCCTTGCGAGATCCTTCATAGGCGTCAACTGTGATGTTAAATGTATCTGGTGTTGATTTGCTAGCCTTGGACCTGCAAGTTTCGTGTACATTCCCAGCTAATCGAAGATGCGGGCTTTTCAGTCATTTGGGCTACAGTCAGTAAAGAGCAAATGGCATGGTTACTTCAATATAACTTGGGAACAGCTGATAACTAATTAGCAGTGGTGACATGACATGTAAAGATCAACAGCACCTGTATATTTCTAACTGGAGGTTGAGACCCTTTAGGCTCTCATCACGAGTGCTTCTTGGTTCTCACACAGTAGTTGAGCCAATGACTCCA-TGGAGGGGAAATTCTTTGCA-GAG-CA-ACA-GTGTTGGTGACTATAAAAATGGCTTTTGGCA-TAGCTGTCTCCTGTAAAGTACTAACTTCAGCA-TTTTAGGATGTCTATTTAGCTAATCTTATGCATTCATCTCATAG-TCAATAGTTCATAGTTT-CT-CTGATTTCATGTATAATCCCCTCAGTTATATTCAGATTTGCCTGTTATTTACTGTCCA-AAGAATTAATAGTTTCTTCGA-CTGTATGTTCTGTTTATAAGCA-TGTGTAGCAATTCGATGTAATATATCATAACTATTACA-CCAGTTGATGTTAACAATGTAGTTTTTCTCTGTATCCCGTTGATGTCAAAAAGCACTCTGAACTGTTGCCTTTTAAAAAAAAAA] [+] EMBL AK100709 [ATTGTGTGGGTGCGGCGGAGGAACGGGTCATGGTGGCCCGGCAGGATTCTGGGGCCCGACGAGCTGCCGCCGTCGCAGATCATGTCGCCAAGGTCCGGCACGCCGGTCAAGCTTCTCGGCCGTGAGGATGCCAGTGTCGACTGGTACAACATTGAAAAATCAAAGCGCGTCAAAGCATTTAGGTGTGGGGAGTTTGATGCATGTATTGAGAAGGCAGAGGCTACTGAAGGGACTTCTGTTAAGAAAAGAGAGAAGTATGCACGTAGAGAAGATGCTATTCTTCATGCTCTTGAATTGGAGAAGAAGCTGCTTGCATCAAAGCATCAGACTCAAGGTTCCAGACCTGCTAACGTTTCTGTTTGCTCTAAACATAACAAAGATCTTGGAAGTACCCGCTACAAGAGCAAAAAGAGTAAGAAACGGAAGGGCATAACTGCTTCTTCTGATATAAAAAAGGAAGCTGAGCAATATGTCCTCCATGCTGGCTCAAAGAGAAACTTTCAAGATTCTCCTACTCGGGGCATTTCTGATAATCTTTTTGGCAATCACTTGGGAGACATCTCGCATGTGAGGCATATACAGGCCGGAGAAAATTTGGATAGCAAGGAGAAAATCACAACTGCGGAAAAGATTAGATCAGATGGAAGTGATTTTGATGAATCTATTGAAAAATGTGACAGACGCCAACCTCTGGTTCAGATTTTGCACAGCAGTCCAAAATTGCCTCATCAGTCACAGCACAATGATGGCTATGGGGATGTCCTAACTCAGGGAGAAATGGATCGATCACCTGCCAATTACCGAGCTAAAAGAAGTAGATATGTATTCCTACCTACTGATTCTGGTGAAACTCATAGTCATAGTGATTTACCTTCCGTACAAGTGGCTTCTACAGGAGGTGATTTTGAGACTGAAAGTTATCTTCATCATCCTGCTTTTTCTGAGGAGCAGACATCTTCTGATCTTGTTGAGAAGCACATATATGAGTCTTCAGAGAGGGAATGCTCTGAGAGTGAGACAGAAGATGACGCTGAACTTTTACAATGTTCGGATTTGATTCTGCATCCAGCATCACATGCCCATGATCCTTATTTCTTACCAGCTTCTGACAAGTTCAGGCATGCGAATATTGATGCTGATGCTGATGAGCTGACCTATTCTTCTTATATGTGTCAAGTGAATGAATCAGAAGAGGATGGCTCTTCTGAGTTGGGCGTCTCCCAATGGCATATGAAAGGTAAACGTAATAGCCGTAATGCACCTAAGAGATCGGATATGGCAGATGGAAATCCCTGGTTAGACAAATCAGATGGTTTCATGGAAGGATCTCCGTATAAAATAAATGGTAGAAATCCCAGAGAAGGGAGTATGCAAATTCCCAATCAGCAATTGCTGGGGCAAAATTTTTACCAAAACGAAGAGGTCAATTACGATTCCGAAGAAACAGATTTTTTTGAGGACACAGGTCATTCAGAGGTTAACTTGTACCATGGTAGAACATATTCTTCATGTTTGAAGGCTACAAGAGATTTTAGCCGAAGCTACAGCTATTTTAACGACTATGGAAATGATTCTTCCAAGGTTTCTCCCCTAAACAGGGATTCAGATAAGATATTTCATTTTGATCGGAATGCATATTGGAGCGGACCCTCATTCTACCAAAAGTACAGTTCACGTCTTCGTGGCAGGGGCCCAATGTTGTTTGATGTTGACTTGAAGGTCCAGGCTAGCTACCAGGGAGAGCATGTTCCTCTTGTTTCCTTAATGAGCAGACTGAATGGCAAAGCAATTGTTGGGCATCCTGTTCAAATTGAAATACTTGAAGATGGTTCCACTGACCACCTGGTTTTTTGTGGTGATGTTAGTTTGGAAGGGAGAACTGGAGGGCAACCTGCTTGGTGTACAGGCAGGAGGACTGCCATGCAAAGAATTCCCCGATCTAACCCCTCAGGGGCATTGGATTGTGATGATGAAGGTACCCTTGCATATCCAGACTGGGAGATGAAACCAGATTTTAGAAAGTACTCAAATTCAGATTTTAGAAAGTACTCAAATTCAAATCATCAGGTTAAGGTTGATAAGAAAAGCATCTCAAATGTTAGGAGGCCGTCAGCCTCTAAATCTCAAAAGAAGCAATCCAAAAAAGCAAGCCTGTCAAGCCAGAAGGTCCGAACCCTCTCTTCCATTTCCACTGGAAAAAAGCATCATGGAGTAGGTGGTCAAGCAAAAGCACATAAGCAGAGTGGCATTTTTGGCGGCTTGATCAAACCAGGGGGAATTCCACTTGTCACATGTGTCCCTGCGAAGGTTGCCTTTACTAGGATACTGGAAGCTGTTGGCAGGCCGCCCCTGGCTGTTGCTCACCGTGTTAGAATGGCTAGTCCTGCCTTGCGAGATCCTTCATAGGCGTCAACTGTGATGTTAAATGTATCTGGTGTTGATTTGCTAGCCTTGGACCTGCAAGTTTCGTGTACATTCCCAGCTAATCGAAGATGCGGGCTTTTCAGTCATTTGGGCTACAGTCAGTAAAGAGCAAATGGCATGGTTACTTCAATATAACTTGGGAACAGCTGATAACTAATTAGCAGTGGTGACATGACATGTAAAGATCAACAGCACCTGTATATTTCTAACTGGAGGTTGAGACCCTTTAGGCTCTCATCACGAGTGCTTCTTGGTTCTCACACAGTAGTTGAGCCAATGACTCCA TGGAGGGGAAATTCTTTGCA GAG CA ACA GTGTTGGTGACTATAAAAATGGCTTTTGGCA TAGCTGTCTCCTGTAAAGTACTAACTTCAGCA TTTTAGGATGTCTATTTAGCTAATCTTATGCATTCATCTCATAG TCAATAGTTCATAGTTT CT CTGATGTCATGTATAATCCCCTCAGTTATATTCAGATTTGCCTGTTATTTACTGTCCA AAGAATTAATAGTTTCTTCGA CTGTATGTTCTGTTTATAAGCA TGTGTAGCAATTCGATGTAATATATCATAACTATTACA CCAGTTGATGTTAACAATGTAGTTTTTCTCTGTATCCCGTTGATGTCAAAAAGCACTCTGAACTGTTGCCTT ] [+] EMBL CB684088 [ TTCTGCACCCTTCATCACATGCCCATGATCCTTATTTCTTACCAGCTTCTGACAAGTTCAGGCATGCGAATATTGATGCTGATGCTGATGAGCTGACCTATTCTTCTTATATGTGTCAAGTGAATGAATCAGAAGAGGATGGCTCTTCTGAGTTGGGCGTCTCCCAATGGCATATGAAAGGTAAACGTAATAGCCGTAATGCACCTAAGAGATCGGATATGGCAGATGGAAATCCCTGGTTAGACAAATCAGATGGTTTCATGGAAGGATCTCCGTATAAAATAAATGGTAGAAATCCCAGAGAAGGGAGTATGCAAATTCCCAATCAGCAATTGCTGGGGCAAAATTTTTACCAAAACGAAGAGGTCAATTACGATTCCGAAGAAACAGATTTTTTTGAGGACACAGGTCATTCAGAGGTTAACTTGTACCATGGTAGAACATATTCTTCATGTTTGAAGGCTACAAGAGATTTTAGCCGAAGCTACAGCTATTTTAACGACTATGGAAATGATTCTTCCAAGGTTTCTCCCCTAAACAGGGATTCAGATAAGATATTTCATTTTGATCGGAATGCATATTGGAGCGGACCCTCATTCTACCAAAAGTACAGTTCACGTCTTCGTGGCAGGGGCCCAATGTTGTTTGATGTTGACTTGAAGGTCCAGGCTAGCTACCAGGGAGAGCATGTTCCTCTTGTTTCCTTAATGAGCAGACTGAATGGCAAAGCAATTGTTGGGCATCCTGTTCAAAT ] [-] EMBL CB684089 [ TGGAGTAGGTGGTCAAGCAAAAGCACATAAGCAGAGTGGCATTTTTGGCGGCTTGATCAAACCAGGGGGAATTCCACTTGTCACATGTGTCCCTGCGAAGGTTGCCTTTACTAGGATACTGGAAGCTGTTGGCAGGCCGCCCCTGGCTGTTGCTCACCGTGTTAGAATGGCTAGTCCTGCCTTGCGAGATCCTTCATAGGCGTCAACTGTGATGTTAAATGTATCTGGTGTTGATTTGCTAGCCTTGGACCTGCAAGTTTCGTGTACATTCCCAGCTAATCGAAGATGCGGGCTTTTCAGTCATTTGGGCTACAGTCAGTAAAGAGCAAATGGCATGGTTACTTCAATATAACTTGGGAACAGCTGATAACTAATTAGCAGTGGTGACATGACATGTAAAGATCAACAGCACCTGTATATTTCTAACTGGAGGTTGAGACCCTTTAGGCTCTCATCACGAGTGCTTCTTGGTTCTCACACAGTAGTTGAGCCAATGACTCCA TGGAGGGGAAATTCTTTGCA GAG CA ACA GTGTTGGTGACTATAAAAATGGCTTTTGGCA TAGCTGTCTCCTGTAAAGTACTAACTTCAGCA TTTTAGGATGTCTATTTAGCTAATCTTATGCATTCATCTCATAG TCAATAGTTCATAGTTT CT CTGATGTCATGTATAATCCCCTCAGTTATATTCAGATTTGCCTGTTATTTACTGTCCA AAGAATTAATAGTTTCTTCGA CTGTATGTTCTGTTTATAAGCA TGTGTAGCAATTCGATGTAATATATCATAACTATTACA CCAGTTGATGTAGACAATGTAGTTTTTCTCTGTATCCCGTTGATG ] [+] EMBL BI813067 [ CCCATGACTCCACTGGAGGGGAAATTCTTTGCA GAGCCA CCA GTGTTGGTGACTATAAAAATGGCTTTTGGCA TAGCTGTCTCCTGTAAAGTACTAACTTCAGCACTTTTAGGATGTCTATTTAGCTAATCTTAGCCATTCATCTCATAGCTCCATAGTTCATAGTTT CT CTGATTTCATGTATAATCCCCTCAGTTATATTCAGATTTCCCTGTTATTTACTGTCCC AAGAATTAATAGTTTCTTCGA CTGTATGTTCTGTTTATAAGCACTGTGTACCCATTCGATGTAATATATCATAACTATTACA CCCGTTGATGTTAACCATGTAGTTTTTCTCTGTATCCCGTTGATGTCCAAAAGCCCTCTGAACTGTTGCCCTTTAAAAAAAAAA] [+] EMBL BQ908841 [ GACTCCACTGGAGGGGAAATTCTTTGCACGAGCCACACACGTGTTGGTGACTATAAAAATGGCTTTTGGCACTAGCTGTCTCCTGTAAAGTACTAACTTCAGCA TTTTAGGATGTCTATTTAGCTAATCTTATGCATTCATCTCATAG TCAATAGTTCATAGTTTCCTCCTGATTTCATGTATAATCCCCTCAGTTATATTCAGATTTGCCTGTTATTTACTGTCCACAAGAATTAATAGTTTCTTCGACCTGTATGTTCTGTTTATAAGCA TGTGTAGCNATTCGATGTAATATATCATAACTATTACACCCAGTTGATGTTAACAATGTAGTTTTTCTCTGTAaaaaaaaaa ] [+] EMBL CA766360 [ TGCA GAG CA ACA GTGTTGGTGACTATAAAAATGGCTTTTGGCA TAGCTGTCTCCTGTAAAGTACTAACTTCAGCA TTTTAGGATGTCTATTTAGCTAATCTTATGCATTCATCTCATAG TCAATAGTTCATAGTTT CT CTGATTTCATGTATAATCCCCTCAGTTATATTCAGATTTGCCTGTTATTTACTGTCCA AAGAATTAATAGTTTCTTCGA CTGTATGTTCTGTTTATAAGCA TGNGTAGCAATTCGATGTAATATATCATAACTATTACA CCAGTTGATGTTAACAATGTAGTTTTTCT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||