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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 993 fasta sequence
[CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC-GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA-ATGG-CCGTGGGTCTCACAAGTC-AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA-CGGAAATCA-AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAATTACAGTTTTGACAGTGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF276229 [CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGCGGGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACAT ]
[+] EMBL AK061501 [ TCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAATTACAGTTTTGACAGTGG ]
[+] EMBL AK102823 [ CCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAAT ]
[+] EMBL BI813488 [ ACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCGCAAAGCACATGGTCCGCGGGTCTCACAAGTCAAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCAGCGGAAATCACAAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGCCCTTGCCTAAaaaaaaa ]
[-] EMBL CF276230 [ GCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATTTTTTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATTTGATTAGCATTTTTTCCTGTTTCGCGAGTTATATTTAAAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATTTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTTTGCAGCAGCAATGAGAAATTACAGTTTTGACAAAGAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[TCTTCGCAAAGCCATGGCCCCCGGGTCTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCAAATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTAAATCTAGAAAGCTGGTAACCCCGTAGTTTATTTACCAGTAAATGTTTGGT]
[-] EMBL CB966192 [TCTTCGCAAAGCCATGGCCCCCGGGTCTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCAAATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTAAATCTAGAAAGCTGGTAACCCCGTAGTTTATTTACCAGTAAATGTTTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9780#0 CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAAC 60
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 CCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGC 120
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 GATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGC 180
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 GGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGA 240
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 GGAGGAGGTGGTGACGGTGCCTAGCGGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAA 300
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 GTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATT 360
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 CCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATC 420
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 ACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGA 480
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 AGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAA 540
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 TGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCC 600
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 CAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCAATGGCCGT-GGGT 659
consensus_9780#1 ----------------------------------TCTTCGCAAAGCCATGGCCCCCGGGT 26
***** ****** ****** ****
consensus_9780#0 CTCACAAGTCAAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCACGGAAATCAA 719
consensus_9780#1 CTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCA 86
************** ********************************** ******** *
consensus_9780#0 AATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCA-TTTGTACTCTGT 778
consensus_9780#1 AATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCT 146
************************* ********************* ********** *
consensus_9780#0 ATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCA-GTAG 837
consensus_9780#1 ATCTGATTAGCATTTTCTCCTGTTTCGCGAGT-AAATCTAGAAAGCTGGTAACCCCGTAG 205
******************************** * ******************* ****
consensus_9780#0 TTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCT 897
consensus_9780#1 TTTATTTACCAGTAAATGTTTGGT------------------------------------ 229
********* *********
consensus_9780#0 TGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAAT 957
consensus_9780#1 ------------------------------------------------------------
consensus_9780#0 TACAGTTTTGACAGTGGAAAAAAAAAAAAAAAAAAA 993
consensus_9780#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||