These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 746 fasta sequence [GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT--AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC-TTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA] [+] EMBL AK066921 [GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCTCCAGTTAGTGAAAA ] [+] EMBL AK066753 [ CTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA] [+] EMBL BM037752 [ GGCG CCGGGGCGTGCCCGC GT C GCGGCGCCGT GT GCCACCGACGTCGAGAGCGAGC CCGCATCCT TGCCTCCCGCT TGCGTCAAGAGCAAGCGCAAGTACTCCTGCT CAGGTGCCTCCGCCGCCTCGTCACCCTGTACAGCTAGACAAAACTTCTTGCTACTNTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTCNNNTCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATNGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTCGTTGTATTTACTCCTCCCNTTAGT ] [+] EMBL OSR05921A [ GATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGNCTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTNCCTCACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCT ] consensusID : consensus_9786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTTCAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGAGCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTGCGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGCGGATCCTGTGCCTCCCGCTCTGCCTCCGCAACAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGCCATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTTAATTAACCCACACTAGCTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTGTTGTTTCATTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGCTGATTAATTGCTTACTACTTGTTCTGCTCATCTTTGTTTAGTTTGAGTAAGTTGAGCCAGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTTTTGGTTGCGTCCTTCAGAGTCTGAACTGGAATGTC] [+] EMBL AK111371 [ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTTCAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGAGCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTGCGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGCGGATCCTGTGCCTCCCGCTCTGCCTCCGCAACAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGCCATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTTAATTAACCCACACTAGCTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTGTTGTTTCATTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGCTGATTAATTGCTTACTACTTGTTCTGCTCATCTTTGTTTAGTTTGAGTAAGTTGAGCCAGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTTTTGGTTGCGTCCTTCAGAGTCTGAACTGGAATGTC] consensusID : consensus_9786#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CGAGCGCCTGCATCCTNGTGCCTCCCGCTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCNGTGTCTTGTATTTAAAAAAAAAAAA] [+] EMBL BQ905917 [CGAGCGCCTGCATCCTNGTGCCTCCCGCTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCNGTGTCTTGTATTTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9786#0 ------------------------GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCC 36 consensus_9786#2 ------------------------------------------------------------ consensus_9786#1 ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTT 60 consensus_9786#0 TGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTG 96 consensus_9786#2 ------------------------------------------------------------ consensus_9786#1 CAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGA 120 consensus_9786#0 GCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTG 156 consensus_9786#2 ------------------------------------------------------------ consensus_9786#1 GCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTG 180 consensus_9786#0 CGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTG 216 consensus_9786#2 ------------------------------------------------------------ consensus_9786#1 CGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTG 240 consensus_9786#0 CGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCC-GCATCCTC-TGCCTCCCG 274 consensus_9786#2 ---------------------------------CGAGCGCCTGCATCCTNGTGCCTCCCG 27 consensus_9786#1 CGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGC-GGATCCTG-TGCCTCCCG 298 * ** * * ***** ********* consensus_9786#0 CTCTGCGTCAAGAG-CAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCAC 333 consensus_9786#2 CTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCAC 87 consensus_9786#1 CTCTGCCTCCGCAA-CAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGC 357 ****** ** * **** **** ********** * **** **** ******* * consensus_9786#0 CCT-CTACAGCTAGACAAAACTTC-TTGCTACTTTCATCACAGTGGTTAATTTCTTGATT 391 consensus_9786#2 CCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATT 147 consensus_9786#1 CATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTT 417 * * * * * * * **** ** * * * ** * ***** ** ** consensus_9786#0 AGGTTCATTTGCCCTTGATTAATTAA--GGATAATCCA-TCCTTCCTTCCTTCCTAGCTC 448 consensus_9786#2 AGGTTCATTTGCCCTTGATTAATTAA--GGATAATCCA-TCCTTCCTTCCTTCCTAGCTC 204 consensus_9786#1 AA-TTAACCCACACTAG-CTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTG 475 * ** * * ** * ** ** ** *** * * * * ** * *** consensus_9786#0 TCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGAC 508 consensus_9786#2 TCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGAC 264 consensus_9786#1 TTGTTTCA-TTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGC 534 * ** ** * *** ** *** * * ** *** ** * consensus_9786#0 TAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTC 568 consensus_9786#2 TAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTC 324 consensus_9786#1 TGATTAATTGCTTACTACTTGTTCTGCTCAT-CTTTGTTTAGTTTGAGTAAGT-TGAGCC 592 * ** ** * * * * * ** ** ** * ** ** ** ** * * consensus_9786#0 TAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGT 628 consensus_9786#2 TAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGT 384 consensus_9786#1 AGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTT-TTGGTTGC 651 * ** ** * *** * * * *** ** ** * consensus_9786#0 GCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGT 688 consensus_9786#2 GCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGT 444 consensus_9786#1 GTCCTTCAGAGTCTGAACTGGAATGTC--------------------------------- 678 * * * * ** *** **** consensus_9786#0 GTAACTATGTGTTCCCAGTGTCTTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA 746 consensus_9786#2 GTAACTATGTGTTCCCNGTGTCTTGTATTTA-------AAAAAAAAAAA--------- 486 consensus_9786#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||