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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1498 fasta sequence
[GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGAC-TTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCATTGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAAAAAGATTGGAAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGTATTTAGTT]
[+] EMBL CB664833 [GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCA ]
[+] EMBL CB664792 [GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGC ]
[-] EMBL CB664793 [ AAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGAC TTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTTTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCATTGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAAAAAGATTGGAAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGTATTTAGTT]
[+] EMBL C98473 [ ACAATAGNCTTTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAANCCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAA ]
[+] EMBL BM418665 [ ccgTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAAC ACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGC AAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCC AAATGAC ATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTAC AAAAAAAAAGTCGACCGGTTGTTCGAGATTaaaaaaaaa ]
consensusID : consensus_9795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[TTTGTAAAATGTTGTCGGTGAAAAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTGGCCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCAACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGCAAAGGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGCCCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCGTCTTCCTATTTTTTGTTTTACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACTTGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGGAAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGTATTTAAAAAAAA]
[+] EMBL BM038890 [TTTGTAAAATGTTGTCGGTGAAAAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTGGCCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCAACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGCAAAGGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGCCCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCGTCTTCCTATTTTTTGTTTTACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACTTGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGGAAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGTATTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9795#0 GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAAC 60
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 GGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAA 120
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 GAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAG 180
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 GGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAA 240
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 GCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACC 300
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 ATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCA 360
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 ACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATG 420
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 CTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAA 480
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 TCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTA 540
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 ACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGA 600
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 AACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCT 660
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 GGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCT 720
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 TGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGAC 780
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 TCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGACTTCCGAACAGA 840
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 AACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGAT 900
consensus_9795#1 ------------------------------------------------------------
consensus_9795#0 CCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTG 960
consensus_9795#1 --------------------------------------TTTGTAAAATGTTGTCGGTGAA 22
* * * ** * *
consensus_9795#0 AAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCA-GTATAGGTG 1019
consensus_9795#1 AAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTG 82
** ****************************************** ** *********
consensus_9795#0 GGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCA-TTCTGACGCTAAAAATGCAA 1078
consensus_9795#1 G--CCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCA 140
* * ******* * *********************** ****************** *
consensus_9795#0 ACTTTCTGATCAAGGAGGGCGACA-AGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCA 1137
consensus_9795#1 ACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCA 200
************************ ****************** ****************
consensus_9795#0 GCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGC 1197
consensus_9795#1 GCTCAGCAAA-GGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGC 259
********** *************************** *********************
consensus_9795#0 CAAAATGAC-AATTCAGCAATACATAAACTCTGC-AGGGGCATGGCCA-AATGTAATTCG 1254
consensus_9795#1 CCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCG 319
* ******* ************************ ************ ***********
consensus_9795#0 TCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCA-T 1313
consensus_9795#1 TCTTCCTATTTTTTGTTT--TACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACT 377
************** *** * **************** ****************** *
consensus_9795#0 TGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAA---AAAGATTGG 1370
consensus_9795#1 TGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGG 437
*********** ************************ ****** *** *********
consensus_9795#0 AAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAG 1430
consensus_9795#1 AAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAG 497
*************** *******************************************
consensus_9795#0 AATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGT 1490
consensus_9795#1 AATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGT 557
*********************************** ****** ** *************
consensus_9795#0 ATTTAGTT---- 1498
consensus_9795#1 ATTTAAAAAAAA 569
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||