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Oryza sativa
cluster # 9799 cluster # 9799       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9799#0 length = 1081 sequences # 5  
consensus_9799#1 length = 463 sequences # 1  

consensusID : consensus_9799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1081
fasta sequence
                              [AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG-CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG-CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG-TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT]

[+] EMBL AK061374             [AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATG                                                                                                                                                                                                                                   ]
[-] EMBL CB684358             [                                                                                                                                                                                                                                   CGCGNCCGCGCCTCCCGCTCGTTTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCAT                                                                                                                                                                                                                          ]
[+] EMBL BM419271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCGCCAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCGCTGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCCCNCATAAAATAGAATGATTTTCCATTAaaaa                                                                                                                                                                                                                    ]
[+] EMBL CB000590             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT]
[+] EMBL CB000587             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              g gAAGGATCGGCCGAAGCAGCTCAGCTTGCTGGAGCAGATTCGGGAGTTCGTCTCATCGCAGTGATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCGATTTTTCTTCTCTTTGCAATCACTCCTCGTATTTGTGCGATAGCG TGCGTGGGCCATGTGACGATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGGTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTATGCGTGGGGGTGAAATCAGCCATCTTCCTGTAATAAAATAGAGTGATTTTCCATTAGACTCACCGATCATTGGCTGTGACATTTGCCGGCCGCCTGTGCATCAGTTATCTCGATCAAGGCTTCAACTTTCACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGA                                                                                                       ]


>consensus_9799#0 AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCG GGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGG ACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAG GACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCGCCGCGCCTC CCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACAC CGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTG GAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGC GCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCG CGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGC CGCAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCG CAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCT TTGCAATCACTCCTCCTATTTGTGCGATAGCGTGCATGGGCCATGTGACAATCTCTTGTG ATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTG ATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGT AATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCC GCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTA GCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGA ATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTG T



consensusID : consensus_9799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence
                              [GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA]

[+] EMBL BM419736             [GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA]


>consensus_9799#1 GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGC GGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGC ACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCT CATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTC TTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACA ATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATAT CAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCA GCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9799#0      AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCG 60
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      GGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGG 120
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      ACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAG 180
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      GACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCGCCGCGCCTC 240
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACAC 300
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTG 360
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      GAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGC 420
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      GCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACG--CCGACGACCTGTGGG 478
consensus_9799#1      ---------GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGG 51
                               *********** ** ************** ***    **************

consensus_9799#0      CGC-GCAGCGGCAAGAAGGGGTACCCGG--AGTACTCGCCGGC-CGTCGCC-GAC-GGCT 532
consensus_9799#1      CGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCT 111
                      *** ********************** *  *********** * ******  *** ****

consensus_9799#0      ACATC-CGC-CGCAAGGATCGGC-CGCAGCAGCTCAC-CTTCCTGGAGC--AGATTCGGG 586
consensus_9799#1      ACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGG 171
                      ***** *** ********** ** ************* ********     *********

consensus_9799#0      TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAA-TTAATCTCTTTTCTTTTCTTAAT 645
consensus_9799#1      TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAAT 231
                      ************************************ ***********************

consensus_9799#0      CTATTTTTCTTCTCTTTGCAA-TCACTC-CTCCTATTTGTGC-GATAGCGTGCATGGG-C 701
consensus_9799#1      CTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGC 291
                      **************** **** ****** ************* *************** *

consensus_9799#0      CATGTGACAATCTCTTGTGATGAATGGATG-ATCACGCGTGCTAC-CTAAC-CTACCAGA 758
consensus_9799#1      CATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAG 351
                      **************************** * ************** ***** ******  

consensus_9799#0      TCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 818
consensus_9799#1      ATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 411
                         *********************************************************

consensus_9799#0      GTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCA-TTAGACTCACTGATC 877
consensus_9799#1      GTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA-------- 463
                      ******************* ************************ *** *          

consensus_9799#0      ATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTT 937
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      TTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACC 997
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATT 1057
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      TTCTGGTCACAATAATTGATGTGT 1081
consensus_9799#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)