These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1081 fasta sequence [AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG-CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG-CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG-TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT] [+] EMBL AK061374 [AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATG ] [-] EMBL CB684358 [ CGCGNCCGCGCCTCCCGCTCGTTTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCAT ] [+] EMBL BM419271 [ GACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCGCCAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCGCTGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCCCNCATAAAATAGAATGATTTTCCATTAaaaa ] [+] EMBL CB000590 [ CCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT] [+] EMBL CB000587 [ g gAAGGATCGGCCGAAGCAGCTCAGCTTGCTGGAGCAGATTCGGGAGTTCGTCTCATCGCAGTGATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCGATTTTTCTTCTCTTTGCAATCACTCCTCGTATTTGTGCGATAGCG TGCGTGGGCCATGTGACGATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGGTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTATGCGTGGGGGTGAAATCAGCCATCTTCCTGTAATAAAATAGAGTGATTTTCCATTAGACTCACCGATCATTGGCTGTGACATTTGCCGGCCGCCTGTGCATCAGTTATCTCGATCAAGGCTTCAACTTTCACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGA ] consensusID : consensus_9799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA] [+] EMBL BM419736 [GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9799#0 AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCG 60 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 GGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGG 120 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 ACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAG 180 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 GACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCGCCGCGCCTC 240 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 CCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACAC 300 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 CGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTG 360 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 GAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGC 420 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 GCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACG--CCGACGACCTGTGGG 478 consensus_9799#1 ---------GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGG 51 *********** ** ************** *** ************** consensus_9799#0 CGC-GCAGCGGCAAGAAGGGGTACCCGG--AGTACTCGCCGGC-CGTCGCC-GAC-GGCT 532 consensus_9799#1 CGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCT 111 *** ********************** * *********** * ****** *** **** consensus_9799#0 ACATC-CGC-CGCAAGGATCGGC-CGCAGCAGCTCAC-CTTCCTGGAGC--AGATTCGGG 586 consensus_9799#1 ACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGG 171 ***** *** ********** ** ************* ******** ********* consensus_9799#0 TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAA-TTAATCTCTTTTCTTTTCTTAAT 645 consensus_9799#1 TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAAT 231 ************************************ *********************** consensus_9799#0 CTATTTTTCTTCTCTTTGCAA-TCACTC-CTCCTATTTGTGC-GATAGCGTGCATGGG-C 701 consensus_9799#1 CTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGC 291 **************** **** ****** ************* *************** * consensus_9799#0 CATGTGACAATCTCTTGTGATGAATGGATG-ATCACGCGTGCTAC-CTAAC-CTACCAGA 758 consensus_9799#1 CATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAG 351 **************************** * ************** ***** ****** consensus_9799#0 TCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 818 consensus_9799#1 ATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 411 ********************************************************* consensus_9799#0 GTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCA-TTAGACTCACTGATC 877 consensus_9799#1 GTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA-------- 463 ******************* ************************ *** * consensus_9799#0 ATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTT 937 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 TTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACC 997 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 CAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATT 1057 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 TTCTGGTCACAATAATTGATGTGT 1081 consensus_9799#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||