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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 794 fasta sequence
[TTTTTCCGCTCAGGATGACA-TGTGGTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAACCAAAACTTTGATCTAACAGATATCTCAAATACCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC-TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA-TGGAAGACATTCT-TGTAGA-CCTGCCTGCCGCCTAC-CGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCGATGGAGGGAAGGGTGTC]
[-] EMBL BM420526 [TTTTTCCGCTCAGGATGACA TGTGGTTCATAGA TTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGACATGAAGCCAAAACCAAAACTTGGATCTAACAGATATCTCAAATACCTTAGTCCTAAACTTTGGATGGTTAATCATCCAACTGGCATTTCTCGACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCGTGATCATCTTCAACCAGTATCTTCTNGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCAGCTTGATGCAGCTCGG CCAAGCCCCTNGTAAAGGCCG CAATCCCTTCATTCTCCATTATGCAATACAGAGCANTGGAAGACATTCTGTGTAGA CCTGCCTGCCGCCTAC CG TCCGACCTGCATTGGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCG GGGTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTG TTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGa ]
[-] EMBL CB661915 [ TGACATTGTTGTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAGCCAAAGCTTTGATCTACCAGATATCTCAAATATCTTAGTCATAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCACCGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGTAGAGACTGCCTGCCGCCTACGCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGC ]
[+] EMBL CB644088 [ GTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGTAGA CCTGCCTGCCGCCTAC CGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCGATGGAGGGAAGGGTGTC]
[+] EMBL CB620934 [ TGACATGAAGCCAAAACCAGAACTTTGATCTAACAGATATCCCAAATACCTTACCCCTAAACTTTTGATTGGTAATCATCCAACTTGGATTTCTCCACGAAAGAAAAAAAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCATCTTGATGCAGCTCGGCCCAAGCCCCTTGGAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGGAAA CCTGCCTGCCGCCTAC CGCTCCGACCTGGATTTGCTTGCAAGCTACCTCCAAAGGGAAGGTGGCGGTGCTCTAGATGGCACCCGCGGCTGAACCGATGAAAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGGCTTCCTGAAAAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCACGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAATATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGC ]
consensusID : consensus_9801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence
[TCTTTTTAAGTTTTTTTTTTTAAGCCAAATAATCCTTTGACATCAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCCTACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCG]
[+] EMBL CB656299 [TCTTTTTAAGTTTTTTTTTTTAAGCCAAATAATCCTTTGACATCAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCCTACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCG]
consensusID : consensus_9801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATATCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTCTCGCGAGAGCGAAAGAGAAAAAAAAGAGAAATCGAGAGGGGATCTCTATTCTTTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTCCATCTAATACGTCGTGGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTGGCAGAGCTCTTCTGAGCGACACACAGTGAGAGTAGTGAGAGATAATCCCCAGCGCGCGCGGAGAGGGGACTATAACGAGGTCTGTGAGAGTAGCGCAGGTCTCGCGGGGCCACAAGAAGCCCCTCTGTGTGTAGAGAGGGGCGCGGCCAAATTTCGCCCC]
[-] EMBL BQ907996 [TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATATCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTCTCGCGAGAGCGAAAGAGAAAAAAAAGAGAAATCGAGAGGGGATCTCTATTCTTTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTCCATCTAATACGTCGTGGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTGGCAGAGCTCTTCTGAGCGACACACAGTGAGAGTAGTGAGAGATAATCCCCAGCGCGCGCGGAGAGGGGACTATAACGAGGTCTGTGAGAGTAGCGCAGGTCTCGCGGGGCCACAAGAAGCCCCTCTGTGTGTAGAGAGGGGCGCGGCCAAATTTCGCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9801#0 -----TTTTTCCGCTCAGGATGACATGTGGTTCA--TAGATTTGAACTCGAGCACAAAAG 53
consensus_9801#1 ------------------------------------TCTTTTTAAGTTTTTTTTTTTAA- 23
consensus_9801#2 TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAG 60
* ** * * **
consensus_9801#0 AAGCCAAATAATCCTTTG-ACA-TGAAGCCAAAACCAAAACTT-TGATCTAACA--GATA 108
consensus_9801#1 --GCCAAATAATCCTTTG-ACA-TCAAGCCAAAGCCAAAACTT-TGATCTAACA--GATA 76
consensus_9801#2 AAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATA 120
************** * *** * ******** ********* ********* ***
consensus_9801#0 TCTCAAATACC-TTAGTCCTAAACTTTTGAT--TGTTAATCATCCAACTTG-CATTTCTC 164
consensus_9801#1 TCTCAAATATC-TTAGTCCTAAACTTTTGAT--TGTTAATCATCCAACTTG-CATTTCTC 132
consensus_9801#2 TCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTC 180
********* * *************** *** * * * ********* ** * ******
consensus_9801#0 A-ACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACT 223
consensus_9801#1 A-ACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACT 191
consensus_9801#2 TCGCGAGAGCGAAAGAGAAAAAAAAGAGAA-----ATCGAGAGGGGAT--------CTCT 227
*** ** ***** * * * ** **** ** * **
consensus_9801#0 ATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCC 283
consensus_9801#1 ATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCC 251
consensus_9801#2 ATTCT--TTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTC---CATCTAATAC- 281
** ** * **** * ** * * * * * * * * * * ** ** *
consensus_9801#0 AGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCC 343
consensus_9801#1 AGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCC 311
consensus_9801#2 -GTCGT-GGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTG------GCAGAGCTC 333
* ** ** ** ** * ** * ** * * *** ** * * *
consensus_9801#0 TTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCC 403
consensus_9801#1 TTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCC 371
consensus_9801#2 TTC--TGAGCGACACACAGTGAGAGTAGTGAGAGATAATC-----------CCCAGCGC- 379
*** * * * ** * ** *** * ** ** ***
consensus_9801#0 TACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGA 463
consensus_9801#1 TACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGA 431
consensus_9801#2 ----GCGCGGAGAGGGGACTA-TAACGAGGT---CTGTGAGAGTAGC--GCAGGTCTCGC 429
** * ** * * * **** * * *** * ** ** * ****
consensus_9801#0 GATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTT 523
consensus_9801#1 GATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTT 491
consensus_9801#2 GGGGCCACAAGAAGCCCCTCTG-TGTGTAGAGA-GGGGCGCGGCCAAATTTCGCCCC--- 484
* * *** * ** * * ** * **** * * * ** * * * **
consensus_9801#0 GAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTA 583
consensus_9801#1 GAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTA 551
consensus_9801#2 ------------------------------------------------------------
consensus_9801#0 TGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTC 643
consensus_9801#1 TGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTC 611
consensus_9801#2 ------------------------------------------------------------
consensus_9801#0 TCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAA 703
consensus_9801#1 TCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAA 671
consensus_9801#2 ------------------------------------------------------------
consensus_9801#0 TCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGC 763
consensus_9801#1 TCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGC 731
consensus_9801#2 ------------------------------------------------------------
consensus_9801#0 TCCAGCAATAAGCGATGGAGGGAAGGGTGTC 794
consensus_9801#1 TCCAGCAATAAGCG----------------- 745
consensus_9801#2 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||