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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1410 fasta sequence
[ATCACTTCGCCTTCGCCTTCGCCGCCGTCTCCCCTCCTCGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCT-GGATCCTTTGCTGAGAGCACAATGGCTG-CTCTCAAGCCTGGATTGAAGAAGNGCAAAGTAGTCAGCAGAACAAAAACAAACCCCCAAACCCAAAACCGCAGGC-ACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAGTCTGATAGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGTCTCTGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATATAGTAGGCAATGTGAAACTCATCTTATCTTGACCCATAGCTGACAGTTCAGTAATGTCGTCTTGTAATTTGTGGACAAAG-GTATTAACATCGTAAGTTGGTAAGCTGTCCAGAGCTTACACTGCAAGTCTAACTTAAAAGGA]
[+] EMBL CA766070 [ATCACTTCGCCTTCGCCTTCGCCGCCGTCTCCCCTCCTCGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCTGGGATCCTTTGCTGAAAGCACAATGGCTGNCTCTCAAGCCTGGATTGAANAANNGCCAAGTAGTCAGCAGAACAAAAACAAACCCCCAAACCCAAAACCGGAGGCNCCCCGNGCCcna ]
[+] EMBL BP184389 [ CTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTG CCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGC AAATTGTGCAGATGCAAGGGA CCTGAT GGGCANACTTGGACAAGTTTGTTTTGGAGGATGAAGAT NCTG CATGAGG NGCANCAAGTATTGATCCA NGCCTTGNGAAAGGATG NTGAC CTA NGC CCAT TG CCAACCNT T GGA CCTTTGTTGAag ]
[-] EMBL CB620644 [ TGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCT GGATCCTTTGCTGAGAGCACAATGGCTG CTCTCAAGCCTGGATTGAAGAAGTGCAAAGTAGTCAGCAGAACAAAAACAA CCCCAAACCCAAAACCGCAGGC ACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAGTCTGATAGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGTCTCTGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATATAGTAGGCAATGTGAAACTCATCTTATCTTGACCCATAGCTGACAGTTCAGTAATGTCGTCTTGTAATTTGTGGACAAAGNGTATTAACATCGTAAGTAGGGAAGCTGTCCAGAGCTTACACTGCAAGTCTAACTTAAAAGGA]
[-] EMBL CA759314 [ GATGTCTGACACTAGTGCACCATCTGCCCAGCCATCT GGATCCTGTGCTGAGAGCACAATGGCTG CTCTCAAGCCTGGANTGAAGAAGNGCAAAGTAGTCAGCAGANCAANAA NCACCCCCAAAACCAAAACCGCAGGC ACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAGTCTGATAGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGTCTCTGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATATAGTAGGCAATGTGAAACTCATCTTATCTTGACCCATAGCTGACAGTTCAGTAATGTCGTCTTGTAATTTGTGGACAAAG GTATTAACATCGTAAGTTGGTAAGCTGTCCAGAGCTTACACTGCAAaaaaa ]
[+] EMBL BP184390 [ CTGACACTAGTGCACCATCTGCCCAGCCATCT GGATCCTTTGCTGAGAGCACAATGGCTG CTCTCAAGCCTGGATTGAAGAAGTGCAAAGTAGTCAGCAGAACAAAAACAA CCCCAAACCCAAAACCGCAGGC ACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAGTCTGATAGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGTCTCTGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATATAGTAGGCAATGTGAAACTCATCTTATCTTGACCCATAGCTGACAGTTCAGTAATGTCGTCTTGTAATTTGTGGACAAAG GTATTAACATCGTAAGTTGGTAAGCTGTCCAGAGCTTACACTGCAAGTCTAAaaa ]
consensusID : consensus_9806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[CGCGCCTCGCGAACCCTAGCAGCCACGCCAATCGCCGCGCGCGCGCGTGGGAGGGCGGCGCCGCACCCGGGAGACGGACGATGTCCGGCGGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAG]
[+] EMBL CB620643 [CGCGCCTCGCGAACCCTAGCAGCCACGCCAATCGCCGCGCGCGCGCGTGGGAGGGCGGCGCCGCACCCGGGAGACGGACGATGTCCGGCGGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9806#0 ---------------------------------------------------ATCACTTCG 9
consensus_9806#1 CGCGCCTCGCGAACCCTAGCAGCCACGCCAATCGCCGCGCGCGCGCGTGGGAGGGCGGCG 60
* * **
consensus_9806#0 CCTTCGCCTTCGCCGCCGTCTCCCCTCCTCG-CCAAGACGAGGGCTCGGGTGATTTGGGT 68
consensus_9806#1 CCG-CACCCGGGAGACGGACGATGTCCGGCGGCCAAGACGAGGGCTCGGGTGATTTGGGT 119
** * ** * * * * * ** ****************************
consensus_9806#0 TCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAA 128
consensus_9806#1 TCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAA 179
************************************************************
consensus_9806#0 AGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTT 188
consensus_9806#1 AGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTT 239
************************************************************
consensus_9806#0 CAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGC 248
consensus_9806#1 CAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGC 299
************************************************************
consensus_9806#0 ACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCAC 308
consensus_9806#1 ACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCAC 359
************************************************************
consensus_9806#0 TTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGT 368
consensus_9806#1 TTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGT 419
************************************************************
consensus_9806#0 AGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCT 428
consensus_9806#1 AGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCT 479
************************************************************
consensus_9806#0 ATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTC 488
consensus_9806#1 ATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTC 539
************************************************************
consensus_9806#0 TTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATT 548
consensus_9806#1 TTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATT 599
************************************************************
consensus_9806#0 AACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAAATTGTGCAGATGC 608
consensus_9806#1 AACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAA-TTGTGCAGATGC 658
*********************************************** ************
consensus_9806#0 AAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCA 668
consensus_9806#1 AAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCA 718
************************************************************
consensus_9806#0 TGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACC 728
consensus_9806#1 TGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAG------ 772
******************************************************
consensus_9806#0 ATCTGCCCAGCCATCTGGATCCTTTGCTGAGAGCACAATGGCTGCTCTCAAGCCTGGATT 788
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 GAAGAAGNGCAAAGTAGTCAGCAGAACAAAAACAAACCCCCAAACCCAAAACCGCAGGCA 848
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 CCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCAT 908
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 GACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTA 968
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 TGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGC 1028
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 CTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTAC 1088
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 CTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAGTCTGAT 1148
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 AGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGTCTC 1208
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 TGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATA 1268
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 TAGTAGGCAATGTGAAACTCATCTTATCTTGACCCATAGCTGACAGTTCAGTAATGTCGT 1328
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 CTTGTAATTTGTGGACAAAGGTATTAACATCGTAAGTTGGTAAGCTGTCCAGAGCTTACA 1388
consensus_9806#1 ------------------------------------------------------------
consensus_9806#0 CTGCAAGTCTAACTTAAAAGGA 1410
consensus_9806#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||