Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9810 cluster # 9810       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9810#0 length = 2131 sequences # 3  
consensus_9810#1 length = 736 sequences # 1  
consensus_9810#2 length = 716 sequences # 1  
consensus_9810#3 length = 423 sequences # 1  

consensusID : consensus_9810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2131
fasta sequence
                              [CTACGCTAATTAATCCAGCAGCTTAGCTTAGCATAGCTTATCTATGGTTTGCCACGTCTTCTCGTCCTTCTCCTCCTCCCTAATTCGTGTGCTGGAGGCGCCGCTGCTCCTTCCAGCTGCTTCGGCTTCTTCTTCTTCTTCTTCTTCTCCGGCGAGCCGGAGCGGTGGCCGCCGCCGCCGTGCAGCCCACGTCCGCCCTTCGCCGGCGATCTATCCCGGCCGCCAAGAACTTGCCTCTCACTCATCCATGCTACCCACCGACTTCGACATCAAGGTGTTGATTGAGCGGCACGAAGCCCTGACGGACGACGTGCAGGAGATGCTGCAGCATCAACGCCGGCGACACCAGAAGACGGCGAGCGGCGGCCGGGAGCGGATAGCCACCGTCGACCACCTCAGGCGCCTCTGCATGGACCACTACTTCCAAGACGAGGTCGACGACGCCATGGACGCCTGCCTGCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTTGACGCCACCCTCGCCTTCCGCCTCATGAGAGAAGCTGGCCACCATGTCTCAGCAGATGAGGTTCTTGGAAGATTCACAGATGATAATGGCGAATTCAGGCTCGATTACAGAAAGGACATCAGAGGGTTACTCAGCCTGCAAGACATATCACACATGAACATTGGACAAGAAGCCTCACTCTGCAAGGCAAAGGAGTTCTCAACCAGGAACCTTGAATCTGCCATCAACTACCTCGAGCCAAATCTTGCAAGATATGTGAGGCAGTCGCTGGATCATCCCTACCATGTCAGCCTGAATCAGTACAAGGCCAGGCACCATCTCAGCTACCTCCAGACCTTGCCTATCCGGTGCACTGCCATGGAGGAGCTCGCACTTGCAGACTTCCAGCTCAACAAGCTACTCCATCAGATGGAGATGCAGGAGATCAAAAGATGGTGGATGGACCTGGGATTGGCTCAAGAAATACCAGTTGCCAGGGACCAGGTTCAGAAATGGTTTGTGTGGATGATGACAGCCATCCAGGGTGCCTCCTTGTCAAGATGCAGAATTGAACTCACAAAGATCGTCTCCTTTGTCTATATTGTGGATGATATTTTTGATCTGGTTGGCACACGTGAGGAGCTCTCCTGCTTCACTCAGGCAATCAGAATGTGGGACCTTGCAGCTGCTGATTCCTTACCTAGCTGCATGAGATCATGCTTCAGGGCTCTACACACAGTTACAAATGACATCGCAGATATGGTCGAGAGAGAACATGGAGTAAACCCTATCAATCATCTGAAGAAAGCTTGGGCAATGCTGTTTGATGGATTCATGACAGAGACAAAATGGTTGTCTGCTGGCCAGGTTCCTGACTCAGAGGAATACCTAAGAAATGGAGTTGTCACCTCAGGAGTGCCACTTGTATTTGTACACCTGCTGTTCATGCTAGGGCATGATGTGAGCCAAAATGCAGCAGAGTTTGTTGATCACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGCTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCCGCTAGCCCCAGTAGATCGTCGCCGGCGACGACCTTCCCCGCCGGCTTCACGCAGGCGGCGCTCAACGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGCTCCCCGTCCTCGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTGAATTTTAATTTCATCCATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGATTAATTGTGGATTAGGTCTTTGTAAATAGGATTATAGTTAGTTGAGTGAGGGAGATAGTACTGGTCGATTTTGTAGTAAATAAATATGATGAATTTTTACTCCCTCCATTATACATATTATAAGGTGTTTTAGTTTTTTTTTCCTATGATAAACTAATTTCAAATTGAATGAATTTGGGCATGTAATTTATTGCCAAAGTTTCAAAAAAAAAGGAAA]

[+] EMBL AK110925             [CTACGCTAATTAATCCAGCAGCTTAGCTTAGCATAGCTTATCTATGGTTTGCCACGTCTTCTCGTCCTTCTCCTCCTCCCTAATTCGTGTGCTGGAGGCGCCGCTGCTCCTTCCAGCTGCTTCGGCTTCTTCTTCTTCTTCTTCTTCTCCGGCGAGCCGGAGCGGTGGCCGCCGCCGCCGTGCAGCCCACGTCCGCCCTTCGCCGGCGATCTATCCCGGCCGCCAAGAACTTGCCTCTCACTCATCCATGCTACCCACCGACTTCGACATCAAGGTGTTGATTGAGCGGCACGAAGCCCTGACGGACGACGTGCAGGAGATGCTGCAGCATCAACGCCGGCGACACCAGAAGACGGCGAGCGGCGGCCGGGAGCGGATAGCCACCGTCGACCACCTCAGGCGCCTCTGCATGGACCACTACTTCCAAGACGAGGTCGACGACGCCATGGACGCCTGCCTGCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTTGACGCCACCCTCGCCTTCCGCCTCATGAGAGAAGCTGGCCACCATGTCTCAGCAGATGAGGTTCTTGGAAGATTCACAGATGATAATGGCGAATTCAGGCTCGATTACAGAAAGGACATCAGAGGGTTACTCAGCCTGCAAGACATATCACACATGAACATTGGACAAGAAGCCTCACTCTGCAAGGCAAAGGAGTTCTCAACCAGGAACCTTGAATCTGCCATCAACTACCTCGAGCCAAATCTTGCAAGATATGTGAGGCAGTCGCTGGATCATCCCTACCATGTCAGCCTGAATCAGTACAAGGCCAGGCACCATCTCAGCTACCTCCAGACCTTGCCTATCCGGTGCACTGCCATGGAGGAGCTCGCACTTGCAGACTTCCAGCTCAACAAGCTACTCCATCAGATGGAGATGCAGGAGATCAAAAGATGGTGGATGGACCTGGGATTGGCTCAAGAAATACCAGTTGCCAGGGACCAGGTTCAGAAATGGTTTGTGTGGATGATGACAGCCATCCAGGGTGCCTCCTTGTCAAGATGCAGAATTGAACTCACAAAGATCGTCTCCTTTGTCTATATTGTGGATGATATTTTTGATCTGGTTGGCACACGTGAGGAGCTCTCCTGCTTCACTCAGGCAATCAGAATGTGGGACCTTGCAGCTGCTGATTCCTTACCTAGCTGCATGAGATCATGCTTCAGGGCTCTACACACAGTTACAAATGACATCGCAGATATGGTCGAGAGAGAACATGGAGTAAACCCTATCAATCATCTGAAGAAAGCTTGGGCAATGCTGTTTGATGGATTCATGACAGAGACAAAATGGTTGTCTGCTGGCCAGGTTCCTGACTCAGAGGAATACCTAAGAAATGGAGTTGTCACCTCAGGAGTGCCACTTGTATTTGTACACCTGCTGTTCATGCTAGGGCATGATGTGAGCCAAAATGCAGCAGAGTTTGTTGATCACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGCTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCCGCTAGCCCCAGTAGATCGTCGCCGGCGACGACCTTCCCCGCCGGCTTCACGCAGGCGGCGCTCAACGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGCTCCCCGTCCTCGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTGAATTTTAATTTCATCCATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGATTAATTGTGGATTAGGTCTTTGTAAATAGGATTATAGTTAGTTGAGTGAGGGAGATAGTACTGGTCGATTTTGTAGTAAATAAATATGATGAATTTTTACTCCC                                                                                                                 ]
[+] EMBL CB619021             [                                                                                                                                                                                                                                                                                                                                                                                              ACCGCCTTCCACCTCAGGCGCCTCTGCATGGACCACTACTTCCAAGACGAGGTCGACGACGCCATGGACGCCTGCCTGCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTTGACGCCACCCTCGCCTTCCGCCTCATGAGAGAAGCTGGCCACCATGTCTCAGCAGATGAGGTTCTTGGAAGATTCACAGATGATAATGGCGAATTCAGGCTCGATTACAGAAAGGACATCAGAGGGTTACTCAGCCTGCAAGACATATCACACATGAACATTGGACAAGAAGCCTCACTCTGCAAGGCAAAGGAGTTCTCAACCAGGAACCTTGAATCTGCCATCAACTACCTCGAGCCAAATCTTGCAAGATATGTGAGGCAGTCGCTGGATCATCCCTACCATGTCAGCCTGAATCAGTACAAGGCCAGGCACCATCTCAGCTACCTCCAGACCTTGCCTATCCGGTGCACTGCCATGGAGGAGCTCGCACTTGCAGACTTCCAGCTCAACAAGCTACTCCATCAGATGGAGATGCAGGAGATCAAAAGATGGTGGATGGACCTGGGATTGGCTCAAGAAATACCAGTTGCCAGGGACCAGGTTCAGAAATGGTTTGTGTGGATGATGACAGCCATCCAGGGTGCCTCCTTGTCAAGATGCAGAATTGAACTCACAAAGATCGTCTCCTTTGTCTATATTGTGGATGATATTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB619022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTGTCACCTCAGGAGTGCCCCTTGTATTTGTACACCTGCTGTTCATGCTAGGGCATGATGTGAGCCAAAATGCAGCAGAGTTTGTTGATCACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGCTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCCGCTAGCCCCAGTAGATCGTCGCCGGCGACGACCTTCCCCGCCGGCTTCACGCAGGCGGCGCTCAACGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGCTCCCCGTCCTCGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTGAATTTTAATTTCATCCATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGATTAATTGTGGATTAGGTCTTTGTAAATAGGATTATAGTTAGTTGAGTGAGGGAGATAGTACTGGTCGATTTTGTAGTAAATAAATATGATGAATTTTTACTCCCTCCATTATACATATTATAAGGTGTTTTAGTTTTTTTTTCCTATGATAAACTAATTTCAAATTGAATGAATTTGGGCATGTAATTTATTGCCAAAGTTTCAAAAAAAAAGGAAA]


>consensus_9810#0 CTACGCTAATTAATCCAGCAGCTTAGCTTAGCATAGCTTATCTATGGTTTGCCACGTCTT CTCGTCCTTCTCCTCCTCCCTAATTCGTGTGCTGGAGGCGCCGCTGCTCCTTCCAGCTGC TTCGGCTTCTTCTTCTTCTTCTTCTTCTCCGGCGAGCCGGAGCGGTGGCCGCCGCCGCCG TGCAGCCCACGTCCGCCCTTCGCCGGCGATCTATCCCGGCCGCCAAGAACTTGCCTCTCA CTCATCCATGCTACCCACCGACTTCGACATCAAGGTGTTGATTGAGCGGCACGAAGCCCT GACGGACGACGTGCAGGAGATGCTGCAGCATCAACGCCGGCGACACCAGAAGACGGCGAG CGGCGGCCGGGAGCGGATAGCCACCGTCGACCACCTCAGGCGCCTCTGCATGGACCACTA CTTCCAAGACGAGGTCGACGACGCCATGGACGCCTGCCTGCTCGAGGAGCTCGCCCATGG CGGCGACCTGCTTGACGCCACCCTCGCCTTCCGCCTCATGAGAGAAGCTGGCCACCATGT CTCAGCAGATGAGGTTCTTGGAAGATTCACAGATGATAATGGCGAATTCAGGCTCGATTA CAGAAAGGACATCAGAGGGTTACTCAGCCTGCAAGACATATCACACATGAACATTGGACA AGAAGCCTCACTCTGCAAGGCAAAGGAGTTCTCAACCAGGAACCTTGAATCTGCCATCAA CTACCTCGAGCCAAATCTTGCAAGATATGTGAGGCAGTCGCTGGATCATCCCTACCATGT CAGCCTGAATCAGTACAAGGCCAGGCACCATCTCAGCTACCTCCAGACCTTGCCTATCCG GTGCACTGCCATGGAGGAGCTCGCACTTGCAGACTTCCAGCTCAACAAGCTACTCCATCA GATGGAGATGCAGGAGATCAAAAGATGGTGGATGGACCTGGGATTGGCTCAAGAAATACC AGTTGCCAGGGACCAGGTTCAGAAATGGTTTGTGTGGATGATGACAGCCATCCAGGGTGC CTCCTTGTCAAGATGCAGAATTGAACTCACAAAGATCGTCTCCTTTGTCTATATTGTGGA TGATATTTTTGATCTGGTTGGCACACGTGAGGAGCTCTCCTGCTTCACTCAGGCAATCAG AATGTGGGACCTTGCAGCTGCTGATTCCTTACCTAGCTGCATGAGATCATGCTTCAGGGC TCTACACACAGTTACAAATGACATCGCAGATATGGTCGAGAGAGAACATGGAGTAAACCC TATCAATCATCTGAAGAAAGCTTGGGCAATGCTGTTTGATGGATTCATGACAGAGACAAA ATGGTTGTCTGCTGGCCAGGTTCCTGACTCAGAGGAATACCTAAGAAATGGAGTTGTCAC CTCAGGAGTGCCACTTGTATTTGTACACCTGCTGTTCATGCTAGGGCATGATGTGAGCCA AAATGCAGCAGAGTTTGTTGATCACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTT GAGACTCTGGGATGACCTGGGCAGTGCCAAGGATGAGGCACAAGAAGGATTGGACGGATC GTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCA CGTGCGGCGGCTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCCGCTAG CCCCAGTAGATCGTCGCCGGCGACGACCTTCCCCGCCGGCTTCACGCAGGCGGCGCTCAA CGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGCTCCCCGTCCT CGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTGAATTTT AATTTCATCCATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGATTAATT GTGGATTAGGTCTTTGTAAATAGGATTATAGTTAGTTGAGTGAGGGAGATAGTACTGGTC GATTTTGTAGTAAATAAATATGATGAATTTTTACTCCCTCCATTATACATATTATAAGGT GTTTTAGTTTTTTTTTCCTATGATAAACTAATTTCAAATTGAATGAATTTGGGCATGTAA TTTATTGCCAAAGTTTCAAAAAAAAAGGAAA



consensusID : consensus_9810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 736
fasta sequence
                              [AACACATCGCTTGATACCACAAACTATAGCTATATTGCTGCATGCAGTAGAGCTGAGATTACGTTAAGCACACAAAAAGCAAGTCTCGATCAATGGCTTCTCATGTCTTCTTCTCCCTGGAGCCATCGCTCCTACCGGTAGCCGCTGCTGCTGCACCGGCGGCCGGCGACGGTGGCCGGAGGAGAGGCCGCCGCCGTGCGGATGGCCGCTTCCGCCCTTCGCCGGCGATCCACCCTGGTCGACCAGAGCTCGCCTCTCACTTGATGTTGCCCAATGAATTGGACATACAGGGCTTCATGGAGCGCCTGGATGGCCTGACGAACGACGTGCAGGAGATGCTGCTGCATCAACGGCGGCGTCAGAGGAGTAGTACGGCGAACGGCGGCGGCGGCGACGGCGGCGCCCGGGAGAGGATGGCCACCGTCGACCACCTGAAGCGCCTCTGCATCGACCACTACTTCCAGGACGAGGTCGACGGCGCCATGGATGCCCACCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTCGATGCCACCCTCGCGTTCCGGCTGATGAGAGAAGCAGGACACCATGTCTCACCAGATGAGGTTCTTGGAAGATTCACAGATGGAAATGGCGATTTCAGCATGGCTTACAGCAAGGACATCAGAGGGCTACTCAGCCTGCAAGACATATCACACATGAACATAGGAGCAGAGGCCTCACTCTACAAAGCAAAGGAGTTCACAAGCAGAAA]

[+] EMBL CB619061             [AACACATCGCTTGATACCACAAACTATAGCTATATTGCTGCATGCAGTAGAGCTGAGATTACGTTAAGCACACAAAAAGCAAGTCTCGATCAATGGCTTCTCATGTCTTCTTCTCCCTGGAGCCATCGCTCCTACCGGTAGCCGCTGCTGCTGCACCGGCGGCCGGCGACGGTGGCCGGAGGAGAGGCCGCCGCCGTGCGGATGGCCGCTTCCGCCCTTCGCCGGCGATCCACCCTGGTCGACCAGAGCTCGCCTCTCACTTGATGTTGCCCAATGAATTGGACATACAGGGCTTCATGGAGCGCCTGGATGGCCTGACGAACGACGTGCAGGAGATGCTGCTGCATCAACGGCGGCGTCAGAGGAGTAGTACGGCGAACGGCGGCGGCGGCGACGGCGGCGCCCGGGAGAGGATGGCCACCGTCGACCACCTGAAGCGCCTCTGCATCGACCACTACTTCCAGGACGAGGTCGACGGCGCCATGGATGCCCACCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTCGATGCCACCCTCGCGTTCCGGCTGATGAGAGAAGCAGGACACCATGTCTCACCAGATGAGGTTCTTGGAAGATTCACAGATGGAAATGGCGATTTCAGCATGGCTTACAGCAAGGACATCAGAGGGCTACTCAGCCTGCAAGACATATCACACATGAACATAGGAGCAGAGGCCTCACTCTACAAAGCAAAGGAGTTCACAAGCAGAAA]


>consensus_9810#1 AACACATCGCTTGATACCACAAACTATAGCTATATTGCTGCATGCAGTAGAGCTGAGATT ACGTTAAGCACACAAAAAGCAAGTCTCGATCAATGGCTTCTCATGTCTTCTTCTCCCTGG AGCCATCGCTCCTACCGGTAGCCGCTGCTGCTGCACCGGCGGCCGGCGACGGTGGCCGGA GGAGAGGCCGCCGCCGTGCGGATGGCCGCTTCCGCCCTTCGCCGGCGATCCACCCTGGTC GACCAGAGCTCGCCTCTCACTTGATGTTGCCCAATGAATTGGACATACAGGGCTTCATGG AGCGCCTGGATGGCCTGACGAACGACGTGCAGGAGATGCTGCTGCATCAACGGCGGCGTC AGAGGAGTAGTACGGCGAACGGCGGCGGCGGCGACGGCGGCGCCCGGGAGAGGATGGCCA CCGTCGACCACCTGAAGCGCCTCTGCATCGACCACTACTTCCAGGACGAGGTCGACGGCG CCATGGATGCCCACCTCGAGGAGCTCGCCCATGGCGGCGACCTGCTCGATGCCACCCTCG CGTTCCGGCTGATGAGAGAAGCAGGACACCATGTCTCACCAGATGAGGTTCTTGGAAGAT TCACAGATGGAAATGGCGATTTCAGCATGGCTTACAGCAAGGACATCAGAGGGCTACTCA GCCTGCAAGACATATCACACATGAACATAGGAGCAGAGGCCTCACTCTACAAAGCAAAGG AGTTCACAAGCAGAAA



consensusID : consensus_9810#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence
                              [CCAGATACCGGATTGAGCTCACAAAGATCGCCTCCTTTGTCTACATTATGGATGACATCTTTGATCTTGTCAGCACACAAGAGGAGCGCTCCTGCTTCACACAGGCAATCAAAATGTGGGACTTTGCAGCTGCTGATTCCTTGCCTAGCTGCATGAGGTCATGCTACAGGGCTATTTACACTGTTACAAATGATATCGCAGATATGGTCGAGAGAGAACACGGAGTAAACCCTATCAATCATTTGAAGAAAGCTTGGGCAGTGCTGTTTGATGGATTAATGACTGAGGCAAAATGGTTGACCTATAGTCATGTTCCCTCCTCAGAGGATTACCTAAGAAATGGTGTTATCACTTCAGGAGTACCACTTATGTTTTTACACTTATTATTCATGCTAGGGCATGATGCAGCAGAGCTCATTGACAACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTCAGACTCTGGGATGACATAGGCAACGCCAAGGAAGGGTTGGATGGATCATACAAGGAGTTGTACCTCAGGGAGAACCCGGGGCTCGCCGCCAGCGAAGCGGAGGAGCACATGCGCGGCTTGATCACCAGGGAGTGGGAGAAGCTCAACCGTGAGAGCTTCTTCTCCGGGAAGGCCTTCCCCGCCAGCTTCACGCAGGCGGCGCTCAATGCCGCCAGGATGGTCGGCGTCATGCACGGCCACGACGGCGAGCAGAGG]

[-] EMBL CB619062             [CCAGATACCGGATTGAGCTCACAAAGATCGCCTCCTTTGTCTACATTATGGATGACATCTTTGATCTTGTCAGCACACAAGAGGAGCGCTCCTGCTTCACACAGGCAATCAAAATGTGGGACTTTGCAGCTGCTGATTCCTTGCCTAGCTGCATGAGGTCATGCTACAGGGCTATTTACACTGTTACAAATGATATCGCAGATATGGTCGAGAGAGAACACGGAGTAAACCCTATCAATCATTTGAAGAAAGCTTGGGCAGTGCTGTTTGATGGATTAATGACTGAGGCAAAATGGTTGACCTATAGTCATGTTCCCTCCTCAGAGGATTACCTAAGAAATGGTGTTATCACTTCAGGAGTACCACTTATGTTTTTACACTTATTATTCATGCTAGGGCATGATGCAGCAGAGCTCATTGACAACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTCAGACTCTGGGATGACATAGGCAACGCCAAGGAAGGGTTGGATGGATCATACAAGGAGTTGTACCTCAGGGAGAACCCGGGGCTCGCCGCCAGCGAAGCGGAGGAGCACATGCGCGGCTTGATCACCAGGGAGTGGGAGAAGCTCAACCGTGAGAGCTTCTTCTCCGGGAAGGCCTTCCCCGCCAGCTTCACGCAGGCGGCGCTCAATGCCGCCAGGATGGTCGGCGTCATGCACGGCCACGACGGCGAGCAGAGG]


>consensus_9810#2 CCAGATACCGGATTGAGCTCACAAAGATCGCCTCCTTTGTCTACATTATGGATGACATCT TTGATCTTGTCAGCACACAAGAGGAGCGCTCCTGCTTCACACAGGCAATCAAAATGTGGG ACTTTGCAGCTGCTGATTCCTTGCCTAGCTGCATGAGGTCATGCTACAGGGCTATTTACA CTGTTACAAATGATATCGCAGATATGGTCGAGAGAGAACACGGAGTAAACCCTATCAATC ATTTGAAGAAAGCTTGGGCAGTGCTGTTTGATGGATTAATGACTGAGGCAAAATGGTTGA CCTATAGTCATGTTCCCTCCTCAGAGGATTACCTAAGAAATGGTGTTATCACTTCAGGAG TACCACTTATGTTTTTACACTTATTATTCATGCTAGGGCATGATGCAGCAGAGCTCATTG ACAACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTCAGACTCTGGGATGACATAG GCAACGCCAAGGAAGGGTTGGATGGATCATACAAGGAGTTGTACCTCAGGGAGAACCCGG GGCTCGCCGCCAGCGAAGCGGAGGAGCACATGCGCGGCTTGATCACCAGGGAGTGGGAGA AGCTCAACCGTGAGAGCTTCTTCTCCGGGAAGGCCTTCCCCGCCAGCTTCACGCAGGCGG CGCTCAATGCCGCCAGGATGGTCGGCGTCATGCACGGCCACGACGGCGAGCAGAGG



consensusID : consensus_9810#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence
                              [ACGCCGAGCGTGCATTCCCCGGTCCCTCGAGCGACCGTACGTCACGTGATTCCGTAGTCTCTTCTGAATTGCGATTCCGATTGATTGCNGACCCTGAATGTGTTGAATGTGTGCACTGCCATTGCGTTATGGAACCTGCATCATCGTGCCATCGCATNACATGGGCGTGCGTACGAGGATTAATTGGTGGATTAGGTGCTCTTCGTGAAATAGGATTATAGTTGAGTTCGAGTCGACGGGACGATGAGTACTGGTCGATTTTGTAGTAAATCAATATGATGAATGTTTTACTCCCTCCATTATACATATTATAAGGTGTTTTAGTGTTTTTTTTCCTANGATAAACTNAATTTCAAGTNGAATGAATTTGGGCATGTAATTTATTGCCCANNGTTTCATTTTGGATTACTCNTTAAAAAAAAA]

[+] EMBL BQ906354             [ACGCCGAGCGTGCATTCCCCGGTCCCTCGAGCGACCGTACGTCACGTGATTCCGTAGTCTCTTCTGAATTGCGATTCCGATTGATTGCNGACCCTGAATGTGTTGAATGTGTGCACTGCCATTGCGTTATGGAACCTGCATCATCGTGCCATCGCATNACATGGGCGTGCGTACGAGGATTAATTGGTGGATTAGGTGCTCTTCGTGAAATAGGATTATAGTTGAGTTCGAGTCGACGGGACGATGAGTACTGGTCGATTTTGTAGTAAATCAATATGATGAATGTTTTACTCCCTCCATTATACATATTATAAGGTGTTTTAGTGTTTTTTTTCCTANGATAAACTNAATTTCAAGTNGAATGAATTTGGGCATGTAATTTATTGCCCANNGTTTCATTTTGGATTACTCNTTAAAAAAAAA]


>consensus_9810#3 ACGCCGAGCGTGCATTCCCCGGTCCCTCGAGCGACCGTACGTCACGTGATTCCGTAGTCT CTTCTGAATTGCGATTCCGATTGATTGCNGACCCTGAATGTGTTGAATGTGTGCACTGCC ATTGCGTTATGGAACCTGCATCATCGTGCCATCGCATNACATGGGCGTGCGTACGAGGAT TAATTGGTGGATTAGGTGCTCTTCGTGAAATAGGATTATAGTTGAGTTCGAGTCGACGGG ACGATGAGTACTGGTCGATTTTGTAGTAAATCAATATGATGAATGTTTTACTCCCTCCAT TATACATATTATAAGGTGTTTTAGTGTTTTTTTTCCTANGATAAACTNAATTTCAAGTNG AATGAATTTGGGCATGTAATTTATTGCCCANNGTTTCATTTTGGATTACTCNTTAAAAAA AAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9810#0      CTACGCTAATTAATCCAGCAGCTTAGCTTAGCATAGCTTATCTATGGTTTGCCACGTCTT 60
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTCGTCCTTCTCCTCCTCCCTAATTCGTGTGCTGGAGGCGCCGCTGCTCCTTCCAGCTGC 120
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      TTCGGCTTCTTCTTCTTCTTCTTCTTCTCCGGCGAGCCGGAGCGGTGGCCGCCGCCGCCG 180
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      TGCAGCCCACGTCCGCCCTTCGCCGGCGATCTATCCCGGCCGCCAAGAACTTGCCTCTCA 240
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTCATCCATGCTACCCACCGACTTCGACATCAAGGTGTTGATTGAGCGGCACGAAGCCCT 300
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      GACGGACGACGTGCAGGAGATGCTGCAGCATCAACGCCGGCGACACCAGAAGACGGCGAG 360
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CGGCGGCCGGGAGCGGATAGCCACCGTCGACCACCTCAGGCGCCTCTGCATGGACCACTA 420
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTTCCAAGACGAGGTCGACGACGCCATGGACGCCTGCCTGCTCGAGGAGCTCGCCCATGG 480
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CGGCGACCTGCTTGACGCCACCCTCGCCTTCCGCCTCATGAGAGAAGCTGGCCACCATGT 540
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTCAGCAGATGAGGTTCTTGGAAGATTCACAGATGATAATGGCGAATTCAGGCTCGATTA 600
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CAGAAAGGACATCAGAGGGTTACTCAGCCTGCAAGACATATCACACATGAACATTGGACA 660
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      AGAAGCCTCACTCTGCAAGGCAAAGGAGTTCTCAACCAGGAACCTTGAATCTGCCATCAA 720
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTACCTCGAGCCAAATCTTGCAAGATATGTGAGGCAGTCGCTGGATCATCCCTACCATGT 780
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CAGCCTGAATCAGTACAAGGCCAGGCACCATCTCAGCTACCTCCAGACCTTGCCTATCCG 840
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      GTGCACTGCCATGGAGGAGCTCGCACTTGCAGACTTCCAGCTCAACAAGCTACTCCATCA 900
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      GATGGAGATGCAGGAGATCAAAAGATGGTGGATGGACCTGGGATTGGCTCAAGAAATACC 960
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      AGTTGCCAGGGACCAGGTTCAGAAATGGTTTGTGTGGATGATGACAGCCATCCAGGGTGC 1020
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTCCTTGTCAAGATGCAGAATTGAACT-CACAAAGATCGTCTCCTTTGTCTATATTGTGG 1079
consensus_9810#2      --------CCAGATACCGGATTGAGCT-CACAAAGATCGCCTCCTTTGTCTACATTATGG 51
consensus_9810#3      -----------------ACGCCGAGCG-TGCATTCCCCGGTCCCTCGAGCGACCGTACG- 41
consensus_9810#1      --------------AACACATCGCTTGATACCACAAACTATAGCTATATTG-CTGCATGC 45
                                            *       *      *     **             * 

consensus_9810#0      ATGATATTTTTGATCTGGT-TGGCACACGTGAGGAGCTCTCCTGCTTCAC-TCAGGCAAT 1137
consensus_9810#2      ATGACATCTTTGATCTTGT-CAGCACACAAGAGGAGCGCTCCTGCTTCAC-ACAGGCAAT 109
consensus_9810#3      -TCACG----TGATTCCGT-AGTCTCTTCTGAATTGCGATTCCGATTGATTGCNGACCCT 95
consensus_9810#1      AGTAGAGCTGAGATTACGTTAAGCACACAAAAAGCAAG-TCTCGATCAATGGCTTCTCAT 104
                         *       ***   **    * *     *       *   * *  *   *      *

consensus_9810#0      CAGAATGTGGGACCTTGCAGCTGCTGATTCCTTACCTAGC-TGCATGAGATCATGCTTCA 1196
consensus_9810#2      CAAAATGTGGGACTTTGCAGCTGCTGATTCCTTGCCTAGC-TGCATGAGGTCATGCTACA 168
consensus_9810#3      GAATGTGTTGAATGTGTGCACTGCCATTGCGTTATGGAACCTGCATCA--TCGTGCCATC 153
consensus_9810#1      G--TCTTCTTCTCCCTGGAGCCATCGCTCCTACCGGTAGC-CGC-TGCTGCTGCACCGGC 160
                           *              *      * *       * *  ** *         *    

consensus_9810#0      GGGCTCTACACACAGTTACAAATGACATCGCAGATATGGTCGAGAGAGAACATGGAGTAA 1256
consensus_9810#2      GGGCTATTTACACTGTTACAAATGATATCGCAGATATGGTCGAGAGAGAACACGGAGTAA 228
consensus_9810#3      GCATNACATGGGCGTGCGTACGAGGATTAATTGGTGGATTAGGTGCTCTTCGTGAAATAG 213
consensus_9810#1      GGCCGGCGACGGTGGCCGGAGGAGAGGCCGCCGCCGTGCGGATGGCCGCTTCCGCCCTTC 220
                      *                  *   *        *                    *   *  

consensus_9810#0      ACCCTATCAATCATCTGAAGAAAGCTTGGGCAATGCTGTTTGATGGATTCATGACAGAGA 1316
consensus_9810#2      ACCCTATCAATCATTTGAAGAAAGCTTGGGCAGTGCTGTTTGATGGATTAATGACTGAGG 288
consensus_9810#3      GAT-TATAGTTGAGTTCGAGTCGACG-GGACGATGAGTACTGGTCGATTTTGTAGTAAAT 271
consensus_9810#1      GCC--GGCGATCCACCCTGGTCGACCAGAGCT-CGCCTCTCACTTGAT--GTTGCCCAAT 275
                                *        *    *  *  *   *        * ***         *  

consensus_9810#0      CAAAATGGTTGTCTGCTGGCCAGGTTCCTGACTCAGAGGAATACCTAAGAAATGGAGTTG 1376
consensus_9810#2      CAAAATGGTTGACCTATAGTCATGTTCCCTCCTCAGAGGATTACCTAAGAAATGGTGTTA 348
consensus_9810#3      CAATATGATGAAT-----GTTTTACTCCCTCCATTA-----TACATATTATAAGGTGTTT 321
consensus_9810#1      GAATTGGACATACAGGGCTTCATGGAGCGCCTGGATGGCCTGACGAACGACGTGCAGGAG 335
                       **   *                    *              **  *  *   *  *   

consensus_9810#0      TCACCTCAGGAGTGCCACTTGTATTTGTACACCTGCTGTTCAT-GCTAGGGCATGATGTG 1435
consensus_9810#2      TCACTTCAGGAGTACCACTTATGTTTTTACACTTATTATTCAT-GCTAGGGCATGATG-- 405
consensus_9810#3      T-------AGTGTTTTTTTTCCTANGATAAACTNAAT-TTCAA-GTNGAATGAATTTG-- 370
consensus_9810#1      ATGCT---GCTGCATCAACGGCGGCGTCAGAGGAGTAGTACGGCGAACGGCGGCGGCGGC 392
                                 *                * *       * *   *            *  

consensus_9810#0      AGCCAAAATGCAGCAGAGTTTGTTGATCACATCCCTCCTGTCATCTCCTGCCCAGCAAAA 1495
consensus_9810#2      ----------CAGCAGAGCTCATTGACAACATCCCTCCTGTCATCTCCTGCCCAGCAAAA 455
consensus_9810#3      ---------GGCATGTAATTTATTGCCCANNGTTTCATTTTGGATTACTCNTTAAAAAAA 421
consensus_9810#1      GACGGCGGCGCCCGGGAGAGGATGGCCACCGTCGACCACCTGAAGCGCCTCTGCATCGAC 452
                                      *     * *               *      *          * 

consensus_9810#0      ATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGGATGAGGCACAAGAAGGATTGGAC 1555
consensus_9810#2      ATCTTCAGACTCTGGGATGACATAGGCAACGCCAAGGA------------AGGGTTGGAT 503
consensus_9810#3      AA---------------------------------------------------------- 423
consensus_9810#1      CACTAC---TTCCAGGACGAGGTCGACGGCGCCATGGATGCC--------CACCTCGAGG 501
                                                                                  

consensus_9810#0      GGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAG 1615
consensus_9810#2      GGATCATACAAGGAGTTGTACCTCAGGGAGAACCCGGGGCTCGCCGCCAGCGAAGCGGAG 563
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      AGCTCGCCCATGGCGGCGACCTGCTCGATGCCACCCTCGCGTTCCGGCTGATGAGAGAAG 561
                                                                                  

consensus_9810#0      GAGCACGTGCGGCGGCTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCC 1675
consensus_9810#2      GAGCACATGCGCGGCTTGATCACCAGGGAGTGGGAGAAGCTCAACCGTGAGAGCTTCTTC 623
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      CAGGACACCATGTCTCACCAGATGAGGTTCTTGGAAGATTCACAGATGGAAATGGCGATT 621
                                                                                  

consensus_9810#0      GCTAGCCCCAGTAGATCGTCGCCGGCGACGACCTTCCCCGCCGGCTTCACGCAGGCGGCG 1735
consensus_9810#2      TCCGG---------------------GAAGGCCTTCCCCGCCAGCTTCACGCAGGCGGCG 662
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      TCAGCATGGCTTACAGCAAGGACATCAGAGGGCTACTCAGCCTGCAAGACATATCACACA 681
                                                                                  

consensus_9810#0      CTCA-ACGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGCTCCC 1794
consensus_9810#2      CTCA-ATGCCGCCAGGATGGTCGGCGTCATGCACGGCCACGACGGCGAGCAGAGG----- 716
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      TGAACATAGGAGCAGAGGCCTCACTCTACAAAGCAAAGGAGTTCACAAGCAGAAA----- 736
                                                                                  

consensus_9810#0      CGTCCTCGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTG 1854
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      AATTTTAATTTCATCCATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGA 1914
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      TTAATTGTGGATTAGGTCTTTGTAAATAGGATTATAGTTAGTTGAGTGAGGGAGATAGTA 1974
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      CTGGTCGATTTTGTAGTAAATAAATATGATGAATTTTTACTCCCTCCATTATACATATTA 2034
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      TAAGGTGTTTTAGTTTTTTTTTCCTATGATAAACTAATTTCAAATTGAATGAATTTGGGC 2094
consensus_9810#2      ------------------------------------------------------------
consensus_9810#3      ------------------------------------------------------------
consensus_9810#1      ------------------------------------------------------------
                                                                                  

consensus_9810#0      ATGTAATTTATTGCCAAAGTTTCAAAAAAAAAGGAAA 2131
consensus_9810#2      -------------------------------------
consensus_9810#3      -------------------------------------
consensus_9810#1      -------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)