These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1534 fasta sequence [GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCGCTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTGTGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGATTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT] [+] EMBL CB675589 [GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCGCTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTGTGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATC ] [+] EMBL AK110558 [ GACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGATTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT] [-] EMBL CB675590 [ TACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTT ] consensusID : consensus_9822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [TGCGGCGCGCTGGTCGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA-CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG-GTCACCACCA-TGACC-GATGGCC-GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCACCCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGGGTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCTCGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCTGGTGAGCCGGCTGGTCGAGAGGACGACGATGGGAAACGGCGTCGTCCG] [+] EMBL BU673907 [TGCGGCGCGCTGGTCGTTNCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGACCGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTGTGTCACCACCACTGACCTGATGGCCTGCGTCG ] [+] EMBL CB965184 [ gCGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG GTCACCACCA TGACC GATGGCC GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCACCCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGGGTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCTCGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCTGGTGAGCCGGCTGGTCGAGAGGACGACGATGGGAAACGGCGTCGTCCG] [+] EMBL CB966954 [ CGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG GTCACCACCA TGACC GATGGCC GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9822#0 GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCG 60 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 CTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTG 120 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 TGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGG 180 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 CGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGC 240 consensus_9822#1 -------------------------------------------------------TGCGG 5 ** consensus_9822#0 CGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTG 300 consensus_9822#1 CGCGCTGGTCGT--TCCTGGAGGGGACGGCGAGGGGCGTGTC-TACGTGGGCGACGGGTG 62 **** ***** ********** ** ** * ** ** ** ***************** consensus_9822#0 GCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCT---------CGTGTC 351 consensus_9822#1 GTTCCACGACGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTGGTCACCACCATGAC 122 * ******* *** ** ************ ** ***** * ** * ** * consensus_9822#0 CAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGA 411 consensus_9822#1 CGATGGCCGCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGT 182 * * * ** ** * *** *** * *** ** ** *** *** ***** consensus_9822#0 GGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCAC 471 consensus_9822#1 GGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCAC 242 ***** *** ****** **** ** **** * ********* *** *** ***** consensus_9822#0 CGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGC 531 consensus_9822#1 CCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGG 302 * * *********** *********** * ** *** ***** * **** ****** consensus_9822#0 GTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCT 591 consensus_9822#1 GTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCT 362 **** ******* ***** ***** **** *** *********** ****** ****** consensus_9822#0 CGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGC 651 consensus_9822#1 CGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGC 422 **** * ***************************************************** consensus_9822#0 GTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCT 711 consensus_9822#1 GTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCT 482 ************************************************************ consensus_9822#0 GTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGG 771 consensus_9822#1 GTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGG 542 ************************************************************ consensus_9822#0 CCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGG 831 consensus_9822#1 CCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGG 602 ************************************************************ consensus_9822#0 CGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTC 891 consensus_9822#1 CGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTC 662 ************************************************ ***** ***** consensus_9822#0 GCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCT 951 consensus_9822#1 GCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCT 722 ******************************** ***************** ** *** ** consensus_9822#0 GGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTA 1011 consensus_9822#1 GGTGAGCCGGCTGGTCGAGAG-GACGACGA-TGGGAAAC-GGCGTCGTCCG--------- 770 ********************* ******** ***** ** * ******* consensus_9822#0 CGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACAT 1071 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 CAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTT 1131 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 CGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTT 1191 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 CTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATC 1251 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 TATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTA 1311 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 GAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCG 1371 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 AAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGT 1431 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 TTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGA 1491 consensus_9822#1 ------------------------------------------------------------ consensus_9822#0 TTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT 1534 consensus_9822#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||