These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 728 fasta sequence [AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA-TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA-CCTGTCAATGGACTTCCG-AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCTGAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACTTTAAAAAAA] [+] EMBL CF314195 [AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAA ] [+] EMBL CA764911 [ aggggggCCACAAGCCGAACGCAATCTGCTCGTTCGTTCCTTGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCACTTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAAAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCTGAAA ] [+] EMBL C28803 [ CGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAA GTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGNTTATCTCCGACCGCATACCGTCTC ] [+] EMBL D42503 [ CCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCNCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAA GTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATNGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGC ] [-] EMBL CF314194 [ TGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAACCCTGTCAATGGACTTCGGNAGG TGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTT CCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGGCTGCTGAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACTTTAAAAAAA] consensusID : consensus_9834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CCAGAGGGCGAGACAAGGGGGATCGTGCCCAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCAATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAATGGCCTTCCGAAAGCATGGCAAGGAAAATTTTTCCAATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCCCCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGGGGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGTCCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAAACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAACTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTTAAAATTTGTTCAAAAAAAAAAAAAAAAA] [-] EMBL CA760969 [CCAGAGGGCGAGACAAGGGGGATCGTGCCCAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCAATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAATGGCCTTCCGAAAGCATGGCAAGGAAAATTTTTCCAATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCCCCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGGGGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGTCCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAAACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAACTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTTAAAATTTGTTCAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9834#0 AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCA 60 consensus_9834#1 ------------------------------------------------------------ consensus_9834#0 ATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATT-GAGGCATCCTGCG 119 consensus_9834#1 -------------------------------CCAGAGGGCGAGACAAGGGGGATCGTGCC 29 * ** ** * * ** *** *** consensus_9834#0 CAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCATTACCA 179 consensus_9834#1 CAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCA 89 ****** ************ ****************** *** * ***** ***** *** consensus_9834#0 ATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAACCTGTCAAT 239 consensus_9834#1 ATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAAT 149 ** ****** ************************** *********************** consensus_9834#0 GGACTTCCGAGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCC 299 consensus_9834#1 GGCCTTCCGA--------------------------AAGCATGGCAAGGAAAATTTTTCC 183 ** ******* ****************** **** consensus_9834#0 AATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCA 359 consensus_9834#1 AATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCC 243 **** **** ******* *********** **** ** ******************* consensus_9834#0 CCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGC 419 consensus_9834#1 CCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGG 303 ******** ** ****** **************************************** consensus_9834#0 GGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGA 479 consensus_9834#1 GGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGT 363 ** ***************************** ********** *************** consensus_9834#0 CCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAA 539 consensus_9834#1 CCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAA 423 *********** ************** *** ******************** ******** consensus_9834#0 ACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAG 599 consensus_9834#1 ACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAA 483 ** *********** **** *** ** *** ********* ********* ******** consensus_9834#0 CTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCT 659 consensus_9834#1 CTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTT 543 ** *********** ********************* * *********** *** ** * consensus_9834#0 GAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACT 719 consensus_9834#1 AAAATTTGTTCAAAAAAAAAAAAAAAAA-------------------------------- 571 *********** * consensus_9834#0 TTAAAAAAA 728 consensus_9834#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||