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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1432 fasta sequence
[CCCCAAAACCCCCGCCTCCTCCTCCGCTTCCCTCTCCTCCCCTCCCCTCGCTCCCCAAAATTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGG-CGCCAACAACAACCCCAACAAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTTGTGATAAACAGATTAAGATGTGGCCGCTGCTCTCCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAAGAGCTTGCCTGGATACCACAGATGAACCTTCTTGTTAGTGGGAGCTGGGACAAGACTCTGAGGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACTGCTGATCGAAATGTAATAGTCTTCAATATGCAGAATCCACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACT-CCAGACAAGGTGTCTTGCTGCATTT-CCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAAGGACGAGTTGGTGTTCATCATGTTGATGATGGTCAACAAGGGAAAAACTTTACATTTAAATGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATGGCTCAATATTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCACAATCCTTCTACTGCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAATGGTAGTTATATGCAATCTTTACACCAAATGCGTTCAGATCAATCCTGGTATTGGATCCAACTTTGTTCTCCCAGGTTCAGATTTTCTGGGGCCTGCGAAGTACAAACCTAATACAGTCATTCAACAGC]
[+] EMBL C72874 [CCCCAAAACCCCCGCCTCCTCCTCCGCTTCCCTCTCCTCCCCTCCCCTCGCTCCCCAAAATTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGG GACGGNCGCCAACAACAACCCCAACAAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGANGTTGTGATAAACAGATTAAGATGTGGCCGTGGCTCTNCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAAGAGt ]
[+] EMBL AK111923 [ GCTTCCCTCTCCTCCCCTCCCCTCGCTCCCCAAAATTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGG CGCCAACAACAACCCCAACAAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTTGTGATAAACAGATTAAGATGTGGCCGCTGCTCTCCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAAGAGCTTGCCTGGATACCACAGATGAACCTTCTTGTTAGTGGGAGCTGGGACAAGACTCTGAGGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACTGCTGATCGAAATGTAATAGTCTTCAATATGCAGAATCCACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACT CCAGACAAGGTGTCTTGCTGCATTT CCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAAGGACGAGTTGGTGTTCATCATGTTGATGATGGTCAACAAGGGAAAAACTTTACATTTAAATGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACCTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCACCACATGCAGTACATTCAATCAGGGTGGCTCAATATTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCACAATCCTTCTACTGCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAATGGTAGTTATATGCAA ]
[+] EMBL AK102655 [ CTCCCCTCGCTCCCCAAAATTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGG CGCCAACAACAACCCCAACAAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTTGTGATAAACAGATTAAGATGTGGCCGCTGCTCTCCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAAGAGCTTGCCTGGATAACACAGATGAACCTTCTTGTTAGTGGGAGCTGGGACAAGACTCTGAGGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACTGCTGATCGAAATGTAATAGTCTTCAATATGCAGAATCCACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACT CCAGACAAGGTGTCTTGCTGCATTT CCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAAGGACGAGTTGGTGTTCATCATGTTGATGATGGTCAACAAGGGAAAAACTTTACATTTAAATGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATGGCTCAATATTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCACAATCCTTCTACTGCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAATGGTAGTTATATGCAATCTTTACACCAAATGCGTTCAGATCAATCCTGGTATTGGATCCAACTTTGTTCTCCCAGGTTCAGATTTTCTGGGGCCTGCGAAGTACAAACCTAATACAGTCATTCAACAGC]
[+] EMBL AU101185 [ AACTCCCAGACAAGGTNTCTTGCTGCATTTNCCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAAGGNCGAGTTGGTGTTCACCATGTTGATGATGGTCAACANGGGAAAAACTTTACATTTAAATGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGNCAGTAAGCAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATGGCTCAATATTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCACAATCCTTCTACTGCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAAaaaaa ]
consensusID : consensus_9842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[TTGCAATATATTATATGCCCTGTCATCATATAGAGATTTCCAATCGTGTAGGCTTTAGGTCTTTTATCCTCATGTGATCAATATTTAATTTGTGTGAAGTGGAGGTGAAAAGTTTATTAGGTGAAATGATATTTCTAGATTTTTTTTAACAAGAGTAAATTAGCCAGTAACAGCTGTGCCCCTCTCTACAACCAGTTCAAATTTCTGTGTTTATCACTGTAACGCTGGACACTTTAAATGTCATTTGCAAGTTGCAACTGACGCTTCCGATGCTTCAACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACTCCAGACAAGGTGTCTTGCTGCATTTCCTGATCAGCAAGGGTTTCTGGTAATGCCTTGTTTTCTCTTTGGTCTAAATGTGGGTTCCGTTCGATGTTTCTTCCTAATAATTTTAGCTCCCATGTACATCCTAATTGCAATCTCAGTAGTTAACTAATGCCTAA]
[+] EMBL AK110703 [TTGCAATATATTATATGCCCTGTCATCATATAGAGATTTCCAATCGTGTAGGCTTTAGGTCTTTTATCCTCATGTGATCAATATTTAATTTGTGTGAAGTGGAGGTGAAAAGTTTATTAGGTGAAATGATATTTCTAGATTTTTTTTAACAAGAGTAAATTAGCCAGTAACAGCTGTGCCCCTCTCTACAACCAGTTCAAATTTCTGTGTTTATCACTGTAACGCTGGACACTTTAAATGTCATTTGCAAGTTGCAACTGACGCTTCCGATGCTTCAACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACTCCAGACAAGGTGTCTTGCTGCATTTCCTGATCAGCAAGGGTTTCTGGTAATGCCTTGTTTTCTCTTTGGTCTAAATGTGGGTTCCGTTCGATGTTTCTTCCTAATAATTTTAGCTCCCATGTACATCCTAATTGCAATCTCAGTAGTTAACTAATGCCTAA]
consensusID : consensus_9842#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 313 fasta sequence
[TTTTTAGACCTGGGGCAATAACTAATTGTATTTTTATCTGACAAGTTACACTTTACTTTCAAACAGACTGTAAATTTGCTTGAGTTTCGATGTGCTAATACCATCCTCTTTGTTGTTTTTTCTTGGATGAAGAACATATATGCTTGGTCTGGTTATTCTTCTCTGATAGGTTCTTGTTTTGTCATTATTTTCGTGTGTAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTTTTCTACTCATTCAGTCCATG]
[+] EMBL CF312854 [TTTTTAGACCTGGGGCAATAACTAATTGTATTTTTATCTGACAAGTTACACTTTACTTTCAAACAGACTGTAAATTTGCTTGAGTTTCGATGTGCTAATACCATCCTCTTTGTTGTTTTTTCTTGGATGAAGAACATATATGCTTGGTCTGGTTATTCTTCTCTGATAGGTTCTTGTTTTGTCATTATTTTCGTGTGTAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTTTTCTACTCATTCAGTCCAT ]
[-] EMBL CF312855 [ TTTTAGACCTGGGGCAATAACTAATTGTATTTTTATCTGACAAGTTACACTTTACTTTCAAACAGACTGTAAATTTGCTTGAGTTTCGATGTGCTAATACCATCCTCTTTGTTGTTTTTTCTTGGATGAAG ACATATATGCTTGGTCTGGTTATTCTTCTCTGATAGGTTCTTGTTTTGTCATTATTTTCGTGTGTAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTTTTCTACTCATTCAGTCCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9842#0 CCCCAAAACCCCCGCCTCCTCCTCCGCTTCCCTCTCCTCCCCTCCCCTCGCTCCCCAAAA 60
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGGCGC 120
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 CAACAACAACCCCAACAAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAG 180
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 CCTCAGCTTCAGTCCCAAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCG 240
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCA 300
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 GCCGGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTTGTGA 360
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TAAACAGATTAAGATGTGGCCGCTGCTCTCCGGTGGGCAGCCCATGGTTTTATCAGGGCA 420
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TGAAGCACCGGTCAAAGAGCTTGCCTGGATACCACAGATGAACCTTCTTGTTAGTGGGAG 480
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 CTGGGACAAGACTCTGAGGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCA 540
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 ACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACTGC 600
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TGATCGAAATGTAATAGTCTTCAATATGCAGAATCCACAGGCTGAATTCAAGAGGATTGT 660
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 GTCACCTTTAAAACTCCAGACAAGGTGTCTTGCTGCATTTCCTGATCAGCAAGGGTTTCT 720
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 GGTTGGATCGATAGAAGGACGAGTTGGTGTTCATCATGTTGATGATGGTCAACAAGGGAA 780
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 AAACTTTACATTTAAATGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAA 840
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------TTGCAATA-TATTATATGCCCTGTCATCATATAGAG 35
consensus_9842#0 CTTTCACCCTGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTG 900
consensus_9842#2 ------------------------------------------------------TTTTTA 6
consensus_9842#1 ATTTCCAATCGTGTAGGCTTTAGGTCTTTTATCCTCATGTGATCAATATTT-AATTTGTG 94
** *
consensus_9842#0 GGACAAGGACAGTAAGCAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCATCA-CAT 959
consensus_9842#2 GACCTGGGGCAATAACTAATTGTATTTTTATCTGACAAGTTACACTTTACTTTCAAACAG 66
consensus_9842#1 TGAAGTGGA-GGTGAAAAGTTTATTAGGTGAAATGATATTTCTAGATTTTTTTTAA-CAA 152
** * * * * * * * * **
consensus_9842#0 GCAGTACATTCAATCA-GG-----ATGGCTCAATAT-TTGCTTATGCGGTATGCTATGAT 1012
consensus_9842#2 ACTGTAAATTTGCTTG-AGTTTCGATGTGCTAATAC-CATCCTCTTTGTTGTTTTTTCTT 124
consensus_9842#1 G-AGTAAATTAGCCAGTAACAGCTGTGCCCCTCTCTACAACCAGTTCAAATTTCTGTGTT 211
*** *** ** * * * * * * *
consensus_9842#0 TG-----GAGCAAGGGTGCCGAGAAGCACAATCCTTCTACTGCAAAAACAAATATCTTTC 1067
consensus_9842#2 GGATGAAGAACATATATGCTTGGTCTGGTTATTCTTCTCTGATAGGTTCTTGTTTTGTCA 184
consensus_9842#1 TA-----TCACTGTAACGCTGGACACTTTAAATGTCATTTGCAAGTTGCAACTGACGCTT 266
* ** * * * * * *
consensus_9842#0 TC--CATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGAC 1125
consensus_9842#2 TTATTTTCGTGTGTAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGAC 244
consensus_9842#1 CCGATGC----TTCAACAGGCTGAATTCAAGAGGA----TTGTGTCACCTT----TAAAA 314
* * * **** **** * * **** * ** *
consensus_9842#0 CTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGC-TA 1184
consensus_9842#2 CTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTT--TTCTAC-TC 301
consensus_9842#1 CTCCAGACAAGGTGTCTTG--CTGCATTTCCTGATCAGCAAGGGTTTCTGGTAATGCCTT 372
** ***** ** * ** * ** * **** * * * * * *
consensus_9842#0 ATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACG 1244
consensus_9842#2 ATTCAGTCCATG------------------------------------------------ 313
consensus_9842#1 GTTTTCTCTTTGG----TCTAAATGTGGGTTCCGTTCGATGTTTCTTCCTA---ATAATT 425
** * **
consensus_9842#0 GTAACTTGTAAACACATACTT-TTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAA 1303
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 TTAGCTCCCATGTACATCCTAATTGCAATCTCAGTAGTTAACTAATGCCTAA-------- 477
consensus_9842#0 TGGTAGTTATATGCAATCTTTACACCAAATGCGTTCAGATCAATCCTGGTATTGGATCCA 1363
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 ACTTTGTTCTCCCAGGTTCAGATTTTCTGGGGCCTGCGAAGTACAAACCTAATACAGTCA 1423
consensus_9842#2 ------------------------------------------------------------
consensus_9842#1 ------------------------------------------------------------
consensus_9842#0 TTCAACAGC 1432
consensus_9842#2 ---------
consensus_9842#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||