cluster # 9843

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Oryza sativa
cluster # 9843 cluster # 9843 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9843#0 length = 1646 sequences # 6

consensus_9843#1 length = 361 sequences # 1

consensusID : consensus_9843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1646
fasta sequence

                              [CCCAAGCAAACCCTTCTTCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCTCCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCC-GGACTCCACCACCTCCTCCTCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCCCCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGCCAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCACCACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCGGCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAGCAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTCATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATCCGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTGGTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCTGAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCAAATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTCGTACTTGCTATCCACAAGGTGGGATTGATGGTGCTGGAACTTCTACTGGCAAAGCATCAAAGATTGAGATGTTGTTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCAGTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTTGGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCAGACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCCCAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTTGGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAGTGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATATGTAGATATAGATGAAAAAAAAGAGA]

[+] EMBL AK074001             [CCCAAGCAAACCCTTCTTCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCTCCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCC GGACTCCACCACCTCCTCCTCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCCCCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGCCAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCACCACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCGGCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAGCAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTCATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATCCGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTGGTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCTGAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCAAATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTCGTACTTGCTATCCACAAGGTGGGATTGATGGTGCTGGAACTTCTACTGGCAAAGCATCAAAGATTGAGATGTTGTTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCAGTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTTGGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCAGACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCCCAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTTGGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAGTGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATATGTA                      ]
[+] EMBL AK064378             [            CTTCTTCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCTCCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCC GGACTCCACCACCTCCTCCTCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCCCCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGCCAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCACCACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCGGCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAGCAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGGAATTCATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATCCGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTGGTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCTGAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCAAATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTCGTACTTGCTATCCACAAGGTGGGATTGATGGTGCTGGAACTTCTACTGGCAAAGCATCAAAGATTGAGATGTTGTTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCAGTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTTGGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCAGACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCCCAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCTTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTTGGTGCAAGATTTTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAGTGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATATGTA                      ]
[+] EMBL CB648268             [             TTCTTCCCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCTCCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCCTGGACTCCACCACCTCCTCCTCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCCCCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGCCAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCACCACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCGGCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCTGGTCGTCAAGCAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTCATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATCCGGGAGATACTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCACAGCTGGTTGTTTCACATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB684712             [                 TCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCTCCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCC GGACTCCACCACCTCCTCCTCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCCCCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGCCAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCACCACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCGGCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAGCAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTCATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATCCGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTGGTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCTGAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCAAATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB684713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAAGATTGAGATGTTGTTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCAGTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTTGGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCAGACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCCCAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTTGGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAGTGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATATGTAGATATAGATGAAAAAAAAGAGA]
[-] EMBL CB648269             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAAGAAGAGGTGGAGATGAGGTGGATGCTGCAGGCGAAGATGACCCTGAAACAACTGACCATCCACAAGAGTGCGAATCAGAGGATGCTTCCCAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTTCCATGACAAAGGCGGGATGAGGCTCGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATTGAATCACAGTGCTCTTGGTGATCATCCTTCAAAGCCACCCCCTGGTCCTTGTATGCCAGATGGCACAAGAGGATTTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCCCGGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTTGGGGCAAGATTCTGCAGA                                                                                                                                ]




>consensus_9843#0
CCCAAGCAAACCCTTCTTCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCT
CCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCCGGACTCCACCACCTCCTCC
TCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCC
CCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGC
CAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCAC
CACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCG
GCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAG
CAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTC
ATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATC
CGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTG
GTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCT
GAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCA
AATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTCGTACTTGCTATCCA
CAAGGTGGGATTGATGGTGCTGGAACTTCTACTGGCAAAGCATCAAAGATTGAGATGTTG
TTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCA
GTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTT
GGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCA
GACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCC
CAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGG
ATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTAT
GGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTT
GCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTT
ACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGC
CGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAA
CCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTT
GGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAG
TGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATA
TGTAGATATAGATGAAAAAAAAGAGA

consensusID : consensus_9843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGCGGCCGTGGTCNNNACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTNNNNGCCACCCCCTGGTCCTCGTATGCCGGATGGCACAAGAGGATTTACCATGGGGCGANNNNNNCCGGTCAATCCTACCAATGCTGTNTAATGGCAGTGGNNNNNNCNGTGGCAGNNTGTTGNCCTGTTCCCTCTTNNNNATCTGATACNNNNNTNNNNNTCCAAACCGATGNNNNNCNNNNNN]

[+] EMBL CF195821             [TCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGCGGCCGTGGTCNNNACTATGGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTNNNNGCCACCCCCTGGTCCTCGTATGCCGGATGGCACAAGAGGATTTACCATGGGGCGANNNNNNCCGGTCAATCCTACCAATGCTGTNTAATGGCAGTGGNNNNNNCNGTGGCAGNNTGTTGNCCTGTTCCCTCTTNNNNATCTGATACNNNNNTNNNNNTCCAAACCGATGNNNNNCNNNNNN]




>consensus_9843#1
TCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGGATGAGGCACGGGAGAGG
GAGAGGACGTGGTGGAAGAGGGCGCGGCCGTGGTCNNNACTATGGCCATAGCCGGGATGC
CAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTTGCTGATCATCCTTNNNN
GCCACCCCCTGGTCCTCGTATGCCGGATGGCACAAGAGGATTTACCATGGGGCGANNNNN
NCCGGTCAATCCTACCAATGCTGTNTAATGGCAGTGGNNNNNNCNGTGGCAGNNTGTTGN
CCTGTTCCCTCTTNNNNATCTGATACNNNNNTNNNNNTCCAAACCGATGNNNNNCNNNNN
N

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9843#0      CCCAAGCAAACCCTTCTTCTCTCTCTCTCTCTCTCCTCTCACGCTTCGCTCGCGGCCGCT 60
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CCTCTCTCTCTCCATCCATCCATGGCGCAGGACGACGCCCCGGACTCCACCACCTCCTCC 120
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      TCATCCGCCTCATCCGCCTCCGCCCCCGCCCCCTCCGCCGCCCGCCTCAACGCCGCCGCC 180
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CCGGAGTTCACCCCTCGATCCGCCGCCCACCACCACCACCACCACGCCAACCCTCGCCGC 240
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CAGCACCGCGGGGGCGGGGGTGGGGCCTACCACCACCACCAGCAGCACTACCAGCCGCAC 300
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CACCACCACCAGCACCACCAGCACTGGCAACACTACGGGGAGGATGAGGGGGACGCCGCG 360
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GCGGCCGGGGCGGTGGGAGAAGGAGGGATCCCGGAGGATGTGGCTCGTCGGGTCGTCAAG 420
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CAGGTGGAATTTTACTTCAGTGATGTCAATCTGGCTACAACAGAACATTTGATGAAATTC 480
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      ATGATTAGAGATCCAGAGGGATTTGTGCCAATGTCTGTAGTTGCATCTTTTAGGAAGATC 540
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CGGGAGTTAGTTAGTGAGAGATCCGCATTGGCTGCAGTATTGCGGACGTCAGCAGAGCTG 600
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GTTGTTTCAGATGATGGAAAAAGGGTTAGACGTCGAGTGCTCTTTACTGAGGCGGATGCT 660
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GAAGAAGTTCAGTCACGCATTGTTGTTGCTGAAAATTTGCGTGAAGAGCACCGCTATCCA 720
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      AATCTTATGAAGATTTTCTCAGCTTTTGGGAGTGTGAAATCAATTCGTACTTGCTATCCA 780
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CAAGGTGGGATTGATGGTGCTGGAACTTCTACTGGCAAAGCATCAAAGATTGAGATGTTG 840
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      TTTGCTAATAAGGTGCATGCTTTTGTGGAGTATGAAACTGTTGAAGATGCTGAAAAGGCA 900
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GTTTCTGAATTCAGTAGTGGGAGAAGCTGGAGAGATGGGATTAGAGTCCGCTCACTGCTT 960
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GGTTGCCTGAAACAAGCCATGGGTCAAGGAAGAAGAGGTGGAGATGAGGTGGATGCTGCA 1020
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      GACGAAGATGACCCTGAAACAACTGACCATCCACAAGACTACGAAACAGAGGATGCTTCC 1080
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      CAGATTTCAGAAGCACATCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGG 1140
consensus_9843#1      -----------------TCTTGATCATCAGGCTGATGATGGCTACCATGACAAAGGCGGG 43
                                       *******************************************

consensus_9843#0      ATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGTGGCCGTGGTCAGTACTAT 1200
consensus_9843#1      ATGAGGCACGGGAGAGGGAGAGGACGTGGTGGAAGAGGGCGCGGCCGTGGTCNNNACTAT 103
                      ***************************************** **********   *****

consensus_9843#0      GGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTT 1260
consensus_9843#1      GGCCATAGCCGGGATGCCAATCATCCAATTGGCACTCCTCCATCGAATCACAGTGCTCTT 163
                      ************************************************************

consensus_9843#0      GCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGATTT 1320
consensus_9843#1      GCTGATCATCCTTNNNNGCCACCCCCTGGTCCTCGTATGCCGGATGGCACAAGAGGATTT 223
                      *************    ************************ ******************

consensus_9843#0      ACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGC 1380
consensus_9843#1      ACCATGGGGCGANNNNNNCCGGTCAATCCTACCAATGCTGTNTAATGGCAGTGGNNNNNN 283
                      ************      **  ******************* ************      

consensus_9843#0      CGGTGGCAGCCTGTTGCCCTGTTCCCTCTTGCAAATCTGATACTTGCCTCAGGTTCCAAA 1440
consensus_9843#1      CNGTGGCAGNNTGTTGNCCTGTTCCCTCTTNNNNATCTGATACNNNNNTNNNNNTCCAAA 343
                      * *******  ***** *************    *********     *     ******

consensus_9843#0      CCGATGAACGCCGATTACCGTTGATACTATAGTTAGATACAACATGTGTTGGTTCGTTTT 1500
consensus_9843#1      CCGATGNNNNNCNNNNNN------------------------------------------ 361
                      ******     *                                                

consensus_9843#0      GGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGCAG 1560
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      TGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATA 1620
consensus_9843#1      ------------------------------------------------------------
                                                                                  

consensus_9843#0      TGTAGATATAGATGAAAAAAAAGAGA 1646
consensus_9843#1      --------------------------