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Oryza sativa
cluster # 9846 cluster # 9846       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9846#0 length = 1804 sequences # 2  
consensus_9846#1 length = 819 sequences # 1  
consensus_9846#2 length = 650 sequences # 3  
consensus_9846#3 length = 601 sequences # 1  

consensusID : consensus_9846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1804
fasta sequence
                              [ATCATTCCTCACCTGCATTCATTCAGAGAATTCTCTGAAGACTGTTGGAATCTGAATACAGGTAGCTAGCTAGAGAGAGTTATGGAAAAGACAAGGAAGGCCACCTCCCCTAAGAGCTCAATGACTAGTAGCACAGGGCCCAAGAGCCCAGTAAGGAATGGAGGTTCTCCTCCTCATAAGAAGAGCACTTCGGAGTTCCGAGGACGGAAAAATGAATCACAAATCTTGCGAAAGGGTGGTCAAGACTCGATAACTCTGGATGAAAGCAAACGCCGTTCTCCAACTTCACAAACATCGCCCAAGAGATCATCACCAAAACACGAGCAACCACTGAGCTACTTCAGGCTTCACACTGAGGAGAGAGCAATAAAGCGAGCTGGTTTCAACTATCAGGTTGCAAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTATTTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTGTATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATATATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGATTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCATTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTCTTTTGGGATGCATTGTACCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGCCTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACTAATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTAAAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAAACAAGCTGGCCGTTTAAAACTAAATTGGAACCCATGCATGTGCATGCTAATAAAGCATAATCCAACAACCTAATAAAAACTTAGAACATACTGTAACTTCAATCATATATGATTCTAAAAAATAATTATAACACCAATTAATAATTATATCCATTTGTATAACAAATTAATTATGTGATATTGACAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTATTTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTTG]

[+] EMBL AK066404             [ATCATTCCTCACCTGCATTCATTCAGAGAATTCTCTGAAGACTGTTGGAATCTGAATACAGGTAGCTAGCTAGAGAGAGTTATGGAAAAGACAAGGAAGGCCACCTCCCCTAAGAGCTCAATGACTAGTAGCACAGGGCCCAAGAGCCCAGTAAGGAATGGAGGTTCTCCTCCTCATAAGAAGAGCACTTCGGAGTTCCGAGGACGGAAAAATGAATCACAAATCTTGCGAAAGGGTGGTCAAGACTCGATAACTCTGGATGAAAGCAAACGCCGTTCTCCAACTTCACAAACATCGCCCAAGAGATCATCACCAAAACACGAGCAACCACTGAGCTACTTCAGGCTTCACACTGAGGAGAGAGCAATAAAGCGAGCTGGTTTCAACTATCAGGTTGCAAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTATTTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTGTATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATATATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGATTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCATTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTCTTTTGGGATGCATTGTACCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGCCTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACTAATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTAAAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAAACAAGCTGGCCGTTTAAAACTAAATTGGAACCCATGCATGTGCATGCTAATAAAGCATAATCCAACAACCTAATAAAAACTTAGAACATACTGTAACTTCAATCATATATGATTCTAAAAAATAATTATAACACCAATTAATAATTATATCCATTTGTATAACAAATTAATTATGTGATATTGACAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTATTTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCT   ]
[-] EMBL CB684447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCATTTGCTAATTAAACAAGCTGGCCGTTTAAAACTAAATTGGAACCCATGCATGTGCATGCTAATAAAGCATAATCCAACACCCTAATAAAAACTTAGAACATACTGTAACTTCAATCATATATGATTCTAAAAAATAATTATACCCCCAATTAATAATTATATCCATTTGTATAACAAATTAATTATGTGATATTGACAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGTTACAATGCCAAGGCCATCAAATAATATTAATCCCCACTAATAGAGGGGAATTATTGCACATATATACCATCCCCCTCTCCATGAACAAACTATTTTTTGCCGGTGGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATTTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTATTTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTTG]


>consensus_9846#0 ATCATTCCTCACCTGCATTCATTCAGAGAATTCTCTGAAGACTGTTGGAATCTGAATACA GGTAGCTAGCTAGAGAGAGTTATGGAAAAGACAAGGAAGGCCACCTCCCCTAAGAGCTCA ATGACTAGTAGCACAGGGCCCAAGAGCCCAGTAAGGAATGGAGGTTCTCCTCCTCATAAG AAGAGCACTTCGGAGTTCCGAGGACGGAAAAATGAATCACAAATCTTGCGAAAGGGTGGT CAAGACTCGATAACTCTGGATGAAAGCAAACGCCGTTCTCCAACTTCACAAACATCGCCC AAGAGATCATCACCAAAACACGAGCAACCACTGAGCTACTTCAGGCTTCACACTGAGGAG AGAGCAATAAAGCGAGCTGGTTTCAACTATCAGGTTGCAAGCAAGATAAATACCAATGAA ATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATG ATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCAC CCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTAT TTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTG TATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATAT ATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGA TTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCA TTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTCTTTTGGGATGCATTGTA CCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGC CTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACT AATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTA AAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAAACAAGCTGGCCGTTTAAAACTAA ATTGGAACCCATGCATGTGCATGCTAATAAAGCATAATCCAACAACCTAATAAAAACTTA GAACATACTGTAACTTCAATCATATATGATTCTAAAAAATAATTATAACACCAATTAATA ATTATATCCATTTGTATAACAAATTAATTATGTGATATTGACAGGTCGACGAGGCCCCTG ACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCAT CGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGG AATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTG TTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACC GTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGA GAACGAAATGGCTCCACATATGTAAATCCTTTTTATTTTTTCCTTTCGCTTTCACTTCTT TGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGA GATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGC TTTG



consensusID : consensus_9846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence
                              [AACATCAATTGTTTGTTTATTAATTAAACTTTTAGATTATCCTTAACAAAGAGGGGTTAATTATTAATATAATTAATTTTTTTTCTGGATGCCAAAATTACTGCTCATATATAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTATTTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTGTATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATATATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGATTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCATTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTTTTTTGGGATGCATTGTACCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGCCTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACTAATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTAAAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAACAAGCTGGCCGTTTAAACTAAATTGGAACCCATGCATGTGC]

[+] EMBL CB684446             [AACATCAATTGTTTGTTTATTAATTAAACTTTTAGATTATCCTTAACAAAGAGGGGTTAATTATTAATATAATTAATTTTTTTTCTGGATGCCAAAATTACTGCTCATATATAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTATTTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTGTATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATATATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGATTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCATTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTTTTTTGGGATGCATTGTACCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGCCTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACTAATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTAAAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAACAAGCTGGCCGTTTAAACTAAATTGGAACCCATGCATGTGC]


>consensus_9846#1 AACATCAATTGTTTGTTTATTAATTAAACTTTTAGATTATCCTTAACAAAGAGGGGTTAA TTATTAATATAATTAATTTTTTTTCTGGATGCCAAAATTACTGCTCATATATAGGTGATA GAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCA GCGTTTGACAAGCCATTTCACCCACAAAGGCAAATTATTACATCAACTTATCATTAATCC AGATATCATTGAAGTGATTATTTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAG TGTAGGCCTCACTCCTGTGTGTATAACAGAATATATAATGCAAATATTAATTATTATTAC TGACAACATATATATATATATATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTA AAAAAGTACGCAGTAAAAGGATTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTA GCTGGACTTTTGGAAGATGCATTACAAAACTTGGAATGATGAATAAACTGTGCATGAATG CCTTTTTTGGGATGCATTGTACCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCAT ATATCAATAATTAGGTACAGCCTAACAAATTATTTAATGATATTTAAGGAAAGGAATATG GACATGAATTAAATTAATACTAATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAG GTTGTTTATTAAGTCTAGCTAAAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAACA AGCTGGCCGTTTAAACTAAATTGGAACCCATGCATGTGC



consensusID : consensus_9846#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 650
fasta sequence
                              [AAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTA-TTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGT--TCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTTGCAT]

[+] EMBL CA766616             [AAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTA TTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGT  TCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTTGCAT]
[+] EMBL AK062197             [AAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCACAAAGGTCGACGAGGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTACAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATCCATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTTCTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTCCACATATGTAAATCCTTTTTATTTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTT    ]
[+] EMBL OS39599              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTTA TTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGT  TCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGRGAGATATATGTGCGTCATCCATGTATATGTCCCTGATCTGGTGGTAACATTGATAATAAAGCTTTG   ]


>consensus_9846#2 AAGCAAGATAAATACCAATGAAATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGAT AGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCC AGCGTTTGACAAGCCATTTCACCCACAAAGGTCGACGAGGCCCCTGACCGTTCCAAAGGA GCCCAGCTTCCTGAGGCTGAAATGCTGCATTGGAGGAGAGTTTCATCGCCATTTTTGCTA CAATGCCAAGGCCATCAAATAATATTAATACACACTAATAGAGGGGAATTATTGCACATA TATACCATCACCCTCTCCATGAACAAACTATTTTTTGCCGGTCGTGTTCATCAGTTAATC CATCTCTATTAAGTACAGTGTCGTTTGTCTCACATGTACCAAAACCGTTGTTTTTAATTT CTTTTGCCTTTCTGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAACGAAATGGCTC CACATATGTAAATCCTTTTTATTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTT TTGTTCTCTCTTTTTTCCCCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATC CATGTATATGTCCCTGATCTGGTGGTAACAATGATAATAAAGCTTTGCAT



consensusID : consensus_9846#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TGTTTGTTGTGTTGGTTGGGCGGCGTTGACTTTGNCCCGGGTCCTGGTGTGTTCGTGTTTGTCCCCATGCTGTAATNTGTNCTCTTTTGTGGGGGATCGGTTGTCCNNCCTTCAGGTCTCCTGGTCCGGTTTTCCCGGGGTTGCAACCCCATGGTGTCGGGGCGTCGTNGTCCAAGATGTGGAGGAAGGAGNGTGGTTCACAAGCCCNACTTCATCCCAGCGTTGACAAACCATGTCACCCACCAAAGNTCCGACGAGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGCGTGAAATGCTGCATTGGAGGAGAGTGTCATCCCATTTTTCTACAATCGCCAAGCCATCAAAATAATATTAATACANCACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTGCTCCATGAACNAACTATTTTTTCCCGTCTGTTCATCAGTTAATCCATCTGCTATTAAGTACAGTNTCGTTTGTCTCACATGTACCAAACCGTTGTTTTTAATNTCGTGTTGCCTTCTGGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAAACGAAATGGCTGCCACATATGTAAATGCCTGTGT]

[+] EMBL BM038696             [TGTTTGTTGTGTTGGTTGGGCGGCGTTGACTTTGNCCCGGGTCCTGGTGTGTTCGTGTTTGTCCCCATGCTGTAATNTGTNCTCTTTTGTGGGGGATCGGTTGTCCNNCCTTCAGGTCTCCTGGTCCGGTTTTCCCGGGGTTGCAACCCCATGGTGTCGGGGCGTCGTNGTCCAAGATGTGGAGGAAGGAGNGTGGTTCACAAGCCCNACTTCATCCCAGCGTTGACAAACCATGTCACCCACCAAAGNTCCGACGAGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGCGTGAAATGCTGCATTGGAGGAGAGTGTCATCCCATTTTTCTACAATCGCCAAGCCATCAAAATAATATTAATACANCACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTGCTCCATGAACNAACTATTTTTTCCCGTCTGTTCATCAGTTAATCCATCTGCTATTAAGTACAGTNTCGTTTGTCTCACATGTACCAAACCGTTGTTTTTAATNTCGTGTTGCCTTCTGGCACGAATCTTCACGTAGGTATAGTAGCATAGAGAAACGAAATGGCTGCCACATATGTAAATGCCTGTGT]


>consensus_9846#3 TGTTTGTTGTGTTGGTTGGGCGGCGTTGACTTTGNCCCGGGTCCTGGTGTGTTCGTGTTT GTCCCCATGCTGTAATNTGTNCTCTTTTGTGGGGGATCGGTTGTCCNNCCTTCAGGTCTC CTGGTCCGGTTTTCCCGGGGTTGCAACCCCATGGTGTCGGGGCGTCGTNGTCCAAGATGT GGAGGAAGGAGNGTGGTTCACAAGCCCNACTTCATCCCAGCGTTGACAAACCATGTCACC CACCAAAGNTCCGACGAGCCCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGCGTGAAA TGCTGCATTGGAGGAGAGTGTCATCCCATTTTTCTACAATCGCCAAGCCATCAAAATAAT ATTAATACANCACTAATAGAGGGGAATTATTGCACATATATACCATCACCCTGCTCCATG AACNAACTATTTTTTCCCGTCTGTTCATCAGTTAATCCATCTGCTATTAAGTACAGTNTC GTTTGTCTCACATGTACCAAACCGTTGTTTTTAATNTCGTGTTGCCTTCTGGCACGAATC TTCACGTAGGTATAGTAGCATAGAGAAACGAAATGGCTGCCACATATGTAAATGCCTGTG T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ATCATTCCTCACCTGCATTCATTCAGAGAATTCTCTGAAGACTGTTGGAATCTGAATACA 60
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      GGTAGCTAGCTAGAGAGAGTTATGGAAAAGACAAGGAAGGCCACCTCCCCTAAGAGCTCA 120
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ATGACTAGTAGCACAGGGCCCAAGAGCCCAGTAAGGAATGGAGGTTCTCCTCCTCATAAG 180
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      AAGAGCACTTCGGAGTTCCGAGGACGGAAAAATGAATCACAAATCTTGCGAAAGGGTGGT 240
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CAAGACTCGATAACTCTGGATGAAAGCAAACGCCGTTCTCCAACTTCACAAACATCGCCC 300
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      AAGAGATCATCACCAAAACACGAGCAACCACTGAGCTACTTCAGGCTTCACACTGAGGAG 360
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      AGAGCAATAAAGCGAGCTGGTTTCAACTATCAGGTTGCAAGCAAGATAAATACCAATGAA 420
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ATTATTCGCAGATTCGAGGAGAAGTTATCAAAGGTGATAGAGGAGCGCGAGATCAAGATG 480
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ATGAGGAAGGAGATGGTTCACAAGGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCAC 540
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CCACAAAGGCAAATTATTACATCAACTTATCATTAATCCAGATATCATTGAAGTGATTAT 600
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      TTAAGATATCAATTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTG 660
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      TATAACAGAATATATAATGCAAATATTAATTATTATTACTGACAACATATATATATATAT 720
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ATATACAGCCGGGTGATAAGCGTAGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGA 780
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      TTGGAGAAGGATGAAACAAAACTTGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCA 840
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      TTACAAAACTTGGAATGATGAATAAACTGTGCATGAATGCCTCTTTTGGGATGCATTGTA 900
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CCCGTAGTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGC 960
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CTAACAAATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACT 1020
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      --------------------------------TGTTTGTTGTGTTGGTTGGGCGGCGTTG 28
consensus_9846#0      AATAAACAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTA 1080
consensus_9846#1      ------------------------------------------------------------
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ACTTTGNCCCGGGTCCTGGTGTGTTCGTGTTTGTCCCCATGCTGTAATNTGTNCTCTTTT 88
consensus_9846#0      AAGCCATCCTTAAATTACAAAAGCATTTGCTAATTAAACAAGCTGGCCGTTTAAAACTAA 1140
consensus_9846#1      ------------AACATCAATTGTTTGTTTATTAATTAAACTTTTAGATTATCCTTAACA 48
                                                                                  

consensus_9846#2      -----AAGCAAGATAAATAC-CAATGAAAT----TATTCGCAGATTCGAGGAGAAGTTAT 50
consensus_9846#3      GTGGGGGATCGGTTGTCCNN-CCTTCAGGTCTCCTGGTCCGGTTTTCCCGGGGTTGCAAC 147
consensus_9846#0      ATTGGAACCCATGCATGTGCATGCTAATAAAGCATAATCCAACAACCTAATAAAAACT-T 1199
consensus_9846#1      AAGAGGGGTTAATTATTAATATAATTAATTT---TTTTTCTGGATGCCAAAATTACTGCT 105
                                              * *       *  *        *             

consensus_9846#2      CAAAG----GTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGA-TGGTTCACAA 105
consensus_9846#3      CCCAT----GGTGTCGGGGCGTCGTNGTCCAAGATGTGGAGGAAGGAGNGTGGTTCACAA 203
consensus_9846#0      AGAAC----ATACTGTAACTTCAATCATATATGATTCTAAAAAATAATTATAACACCAAT 1255
consensus_9846#1      CATATATAGGTGATAGAGGAGCGCGAGATCAAGATGATGAGGAAGGAGA-TGGTTCACAA 164
                         *         *                * ***    *  **  *   *    *  * 

consensus_9846#2      GGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCAC----AAAGGTCGACGAGGC 161
consensus_9846#3      GCCCNACTTCATCCCAGCGTT-GACAAACCATGTCACCCACC---AAAGNTCCGACGAGC 259
consensus_9846#0      TAATAATTATATCCATTTGTATAACAAATTAATTATGTGATATTGACAGGTCGACGAGGC 1315
consensus_9846#1      GGCCCAACTCATGCCAGCGTTTGACAAGCCATTTCACCCAC----AAAGGCAAATTATTA 220
                           *    ** *    **   ****   *  *     *     * **           

consensus_9846#2      CCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATG-CTGCATTGGAGGAGAG 220
consensus_9846#3      CCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGCGTGAAATG-CTGCATTGGAGGAGAG 318
consensus_9846#0      CCCTGACCGTTCCAAAGGAGCCCAGCTTCCTGAGGCTGAAATG-CTGCATTGGAGGAGAG 1374
consensus_9846#1      CATCAACTTATC---ATTAATCCAGATATC----ATTGAAGTGATTATTTAAGATATCAA 273
                      *    **   **   *  *  **** *  *      **** **  *   *  **    * 

consensus_9846#2      TTTCATCGCCAT-TTTTGCTACAATGCCAAGGCCATCAAA-TAATATTAATACAC-ACTA 277
consensus_9846#3      TGTCATC-CCAT-TTTT-CTACAATCGCCAAGCCATCAAAATAATATTAATACANCACTA 375
consensus_9846#0      TTTCATCGCCAT-TTTTGCTACAATGCCAAGGCCATCAAA-TAATATTAATACAC-ACTA 1431
consensus_9846#1      TTGGTTCACCAAATCTTAGTACAGAAGTGTAGGCCTCACTCCTGTGTGTATAACAGAATA 333
                      *    ** ***  * **  ****        * * ***      * *  ***    * **

consensus_9846#2      ATAGAGGGGAATTATTGCACATATATACCATCACCCT-CTCCATGAACAAACTATTTTTT 336
consensus_9846#3      ATAGAGGGGAATTATTGCACATATATACCATCACCCTGCTCCATGAACNAACTATTTTTT 435
consensus_9846#0      ATAGAGGGGAATTATTGCACATATATACCATCACCCT-CTCCATGAACAAACTATTTTTT 1490
consensus_9846#1      -TATAATGCAAATATTAATTATTATTACTGACAACAT---ATATATATATATATATACAG 389
                       ** *  * ** ****    **   ***   ** * *     **  *   *    *    

consensus_9846#2      GCCGGTCGTGTTCATCAGTTAATCCATCT-CTATTAAGTACAGTGTCG-----TTTGTCT 390
consensus_9846#3      CCCGTC--TGTTCATCAGTTAATCCATCTGCTATTAAGTACAGTNTCG-----TTTGTCT 488
consensus_9846#0      GCCGGTCGTGTTCATCAGTTAATCCATCT-CTATTAAGTACAGTGTCG-----TTTGTCT 1544
consensus_9846#1      CCGGGTGATAAGCGT-AGTAAAAACTCTTTTAAAAAAGTACGCAGTAAAAGGATTGGAGA 448
                       * *    *   * * *** **  *   *   *  ******    *       ** *   

consensus_9846#2      CACATGTACCAAAACCGTTGTTTTTAATTTCTT-TTGCCTTTCTGCACGAATCTTCACGT 449
consensus_9846#3      CACATGTACCAAA-CCGTTGTTTTTAATNTCGTGTTGCCTTCTGGCACGAATCTTCACGT 547
consensus_9846#0      CACATGTACCAAAACCGTTGTTTTTAATTTCTT-TTGCCTTTCTGCACGAATCTTCACGT 1603
consensus_9846#1      AGGATGAAACAAAACT-TGATGATGAGTTGCTAGCTGGACTTTTGGAAGATGCATTACAA 507
                         *** * **** *  *  *  * * *  *    **   *   * * **  * * **  

consensus_9846#2      AGGT-ATAGTAGCATAGAGAA-CGAAATGGCT-CCACATATGTAAATCCTTTTT------ 500
consensus_9846#3      AGGT-ATAGTAGCATAGAGAAACGAAATGGCTGCCACATATGTAAATGCCTGTG------ 600
consensus_9846#0      AGGT-ATAGTAGCATAGAGAA-CGAAATGGCT-CCACATATGTAAATCCTTTTTA----- 1655
consensus_9846#1      AACTTGGAATGATGAATAAACTGTGCATGAATGCCTTTTTTGGGATGCATTGTACCCGTA 567
                      *  *   * *     * * *      ***  * **   * **  *     * *       

consensus_9846#2      ATTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCT--TTTTTCC 558
consensus_9846#3      T----------------------------------------------------------- 601
consensus_9846#0      TTTTTTCCTTTCGCTTTCACTTCTTTGTTGCCTTTGCTTTTTGTTCTCTCTCTTTTTTCC 1715
consensus_9846#1      GTTGATATATAGATTTAGGTAGTACAGATTCATATATCAATAATTAGGTACAGCCTAACA 627
                                                                                  

consensus_9846#2      CCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGAT 618
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CCTTTCTTCACTGAAGACTAGGAGAGATATATGTGCGTCATCCATGTATATGTCCCTGAT 1775
consensus_9846#1      AATTATTTAATGATATTTAAGGAAAGGAATATGGACATGAATTAAATTAATACTAATAAA 687
                                                                                  

consensus_9846#2      CTGGTGGTAACAATGATAATAAAGCTTTGCAT---------------------------- 650
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      CTGGTGGTAACAATGATAATAAAGCTTTG------------------------------- 1804
consensus_9846#1      CAGTGAGGATGGTTGGTTTTAATGAACTAGTAGGTTGTTTATTAAGTCTAGCTAAAGCCA 747
                                                                                  

consensus_9846#2      ------------------------------------------------------------
consensus_9846#3      ------------------------------------------------------------
consensus_9846#0      ------------------------------------------------------------
consensus_9846#1      TCCTTAAATTACAAAAGCATTTGCTAATTAACAAGCTGGCCGTTTAAACTAAATTGGAAC 807
                                                                                  

consensus_9846#2      ------------
consensus_9846#3      ------------
consensus_9846#0      ------------
consensus_9846#1      CCATGCATGTGC 819
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)