These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1524 fasta sequence [TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT] [+] EMBL AK111895 [TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT] [+] EMBL AK112093 [TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT] [+] EMBL CB652361 [ AGGGGCCTGTACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTC ] [+] EMBL D42466 [ AGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACAT ] [+] EMBL AU093602 [ AGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAAaaaa ] [+] EMBL AU093601 [ AGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTG ] consensusID : consensus_9848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNGTGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGAACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTCGCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA] [+] EMBL C27131 [AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNGTGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGAACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTCGCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9848#0 --------------------------------------------------TTAACCTCCT 10 consensus_9848#1 AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCT 60 ********** consensus_9848#0 CGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTA 70 consensus_9848#1 CGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGC-GTTCGGGGTTCGCGTTTTTA 119 *************************************** ******************** consensus_9848#0 TCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCC 130 consensus_9848#1 TCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNG 179 ******************************************************** consensus_9848#0 GCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGG 190 consensus_9848#1 TGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGA 239 ** * *********************** ************** * *** consensus_9848#0 ACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTC 250 consensus_9848#1 ACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTC 299 ***** ****************************** ******* *************** consensus_9848#0 GCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAG 310 consensus_9848#1 GCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA---------------- 343 ******** ******** *********** ************ consensus_9848#0 CAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTG 370 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 TGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACC 430 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 AAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAA 490 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 ACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATC 550 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 CCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCT 610 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCT 670 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 CCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGT 730 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTG 790 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 AAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGC 850 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 CAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAA 910 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 CAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGT 970 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGG 1030 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGG 1090 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 AAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCC 1150 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 ATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAAT 1210 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGC 1270 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 AACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTT 1330 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 ATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGA 1390 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 CGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTT 1450 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 GAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATT 1510 consensus_9848#1 ------------------------------------------------------------ consensus_9848#0 AATTAAGATGGTGT 1524 consensus_9848#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||