These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1103 fasta sequence [AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK070619 [AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAAT ] [+] EMBL AU182413 [ CCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGA ] [-] EMBL CA762365 [ ACAAG GG G GATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCCCTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCCCAAGGCAGAATACCAATGGAGTTCCAAATATAGTAGAAATATAAGCCAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCCCAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA767049 [ AGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAG ] [+] EMBL AU182414 [ TTTTTTTCATTCAAGATGGAAGGAAGGTTCCTNCTGCTTCATGTTTTATGGCCACAAGGCAGAATNCCAATGGAGTNACAGATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACAaaaa ] [+] EMBL BI800793 [ CATGGGCCTTGCATGAGCTCATCAATGCTACTACTC CAAAGAC AAAAACTGTTTCTTTTCATTTCTGATCTTAAGTTCATCACAACTGGTGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTTGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAATAAaaa ] consensusID : consensus_9856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA] [+] EMBL BM419048 [ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9856#0 AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCG 60 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGA 120 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCG 180 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTAC 240 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 TGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGC 300 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTC 360 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGAT 420 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAG 480 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTG 540 consensus_9856#1 ------------------------------------------------------------ consensus_9856#0 GTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAG 600 consensus_9856#1 ------------------------ATAAGACAAGAGTANGCCTCAGCTAAGCCATGG--- 33 * * * * ** *** **** ** consensus_9856#0 AAGTTTGCTACAGGAGCATCTGTTG-TTAAGGGCCCCACTGAGAAGGAGCAAATTGATGT 659 consensus_9856#1 -----CTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGT 88 * * **** *** * * * ** ** * * * * ** *** consensus_9856#0 GCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACC 719 consensus_9856#1 TCATGTTCTGATCT----TAAGTTCATCAACAAC-TGGTGGTTATATCGACAACTGGTCC 143 ** * ** * * * ** * * * * * ** * * * ** ** consensus_9856#0 TGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTAT 779 consensus_9856#1 CATGTGTATCAACTTTATCCT-------GCAAGTTAGTTTGGTATTGCTAACCACTTTGA 196 ** ** *** ** * * *** ** ** * **** *** consensus_9856#0 GGCCACAAGGCAGAATACCA--ATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGT 837 consensus_9856#1 AGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAAC-GACATGCCAAAGAAGAGT 255 * *** * * * * ** * * ** ** * ** ** * * ****** consensus_9856#0 ATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAG 897 consensus_9856#1 -------CAA-------ATTAGTAGTGTTTCGGCCCATT-------CTGCT--TTCATAG 292 ** ** * ** * ** *** ** ** **** ** consensus_9856#0 ACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGA 957 consensus_9856#1 A--GAAAGCTNGTTTC--ACANCTGCAAGTTTGGATTTG--AATGTTGATCTTTCGTTGA 346 * *** ** **** ** * ** ** * ** * *** * ** consensus_9856#0 GGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTA-GTTTGGTATTGCTAAGCCAT 1016 consensus_9856#1 GTTCTCG-CTCAT---CAGGGCTTCTAACTGCCAAGTTATGGTTTGTA--ATTGGG--GT 398 * ** * * *** * * ** * ******* * ** *** * * * consensus_9856#0 TGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCT--TCATATTTAACGACATGCAAAGA 1074 consensus_9856#1 TGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAA 458 ** ** ** *** ** * *** * * * *** * ** *** * consensus_9856#0 AGAGTGCAAAAAAAAAAAAAAAAAAAAAA 1103 consensus_9856#1 AAAA------------------------- 462 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||