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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1103 fasta sequence
[AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK070619 [AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAAT ]
[+] EMBL AU182413 [ CCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGA ]
[-] EMBL CA762365 [ ACAAG GG G GATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCCCTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCCCAAGGCAGAATACCAATGGAGTTCCAAATATAGTAGAAATATAAGCCAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCCCAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA767049 [ AGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAG ]
[+] EMBL AU182414 [ TTTTTTTCATTCAAGATGGAAGGAAGGTTCCTNCTGCTTCATGTTTTATGGCCACAAGGCAGAATNCCAATGGAGTNACAGATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACAaaaa ]
[+] EMBL BI800793 [ CATGGGCCTTGCATGAGCTCATCAATGCTACTACTC CAAAGAC AAAAACTGTTTCTTTTCATTTCTGATCTTAAGTTCATCACAACTGGTGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTTGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAATAAaaa ]
consensusID : consensus_9856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA]
[+] EMBL BM419048 [ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9856#0 AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCG 60
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGA 120
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCG 180
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTAC 240
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 TGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGC 300
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTC 360
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGAT 420
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAG 480
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTG 540
consensus_9856#1 ------------------------------------------------------------
consensus_9856#0 GTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAG 600
consensus_9856#1 ------------------------ATAAGACAAGAGTANGCCTCAGCTAAGCCATGG--- 33
* * * * ** *** **** **
consensus_9856#0 AAGTTTGCTACAGGAGCATCTGTTG-TTAAGGGCCCCACTGAGAAGGAGCAAATTGATGT 659
consensus_9856#1 -----CTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGT 88
* * **** *** * * * ** ** * * * * ** ***
consensus_9856#0 GCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACC 719
consensus_9856#1 TCATGTTCTGATCT----TAAGTTCATCAACAAC-TGGTGGTTATATCGACAACTGGTCC 143
** * ** * * * ** * * * * * ** * * * ** **
consensus_9856#0 TGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTAT 779
consensus_9856#1 CATGTGTATCAACTTTATCCT-------GCAAGTTAGTTTGGTATTGCTAACCACTTTGA 196
** ** *** ** * * *** ** ** * **** ***
consensus_9856#0 GGCCACAAGGCAGAATACCA--ATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGT 837
consensus_9856#1 AGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAAC-GACATGCCAAAGAAGAGT 255
* *** * * * * ** * * ** ** * ** ** * * ******
consensus_9856#0 ATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAG 897
consensus_9856#1 -------CAA-------ATTAGTAGTGTTTCGGCCCATT-------CTGCT--TTCATAG 292
** ** * ** * ** *** ** ** **** **
consensus_9856#0 ACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGA 957
consensus_9856#1 A--GAAAGCTNGTTTC--ACANCTGCAAGTTTGGATTTG--AATGTTGATCTTTCGTTGA 346
* *** ** **** ** * ** ** * ** * *** * **
consensus_9856#0 GGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTA-GTTTGGTATTGCTAAGCCAT 1016
consensus_9856#1 GTTCTCG-CTCAT---CAGGGCTTCTAACTGCCAAGTTATGGTTTGTA--ATTGGG--GT 398
* ** * * *** * * ** * ******* * ** *** * * *
consensus_9856#0 TGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCT--TCATATTTAACGACATGCAAAGA 1074
consensus_9856#1 TGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAA 458
** ** ** *** ** * *** * * * *** * ** *** *
consensus_9856#0 AGAGTGCAAAAAAAAAAAAAAAAAAAAAA 1103
consensus_9856#1 AAAA------------------------- 462
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||