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Oryza sativa
cluster # 9856 cluster # 9856       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9856#0 length = 1103 sequences # 6  
consensus_9856#1 length = 462 sequences # 1  

consensusID : consensus_9856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1103
fasta sequence
                              [AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK070619             [AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAAT                                                                         ]
[+] EMBL AU182413             [                                            CCCTCGAGCACCAGCGGAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGAGCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCGGAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTACTGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGCGTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTCGGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGATGCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAGGATAAACAAGAGGTTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CA762365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAAG GG  G GATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCCCTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCCCAAGGCAGAATACCAATGGAGTTCCAAATATAGTAGAAATATAAGCCAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCCCAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTGCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA767049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAG                           ]
[+] EMBL AU182414             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTTTTTCATTCAAGATGGAAGGAAGGTTCCTNCTGCTTCATGTTTTATGGCCACAAGGCAGAATNCCAATGGAGTNACAGATATAGTAGAAATATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACAaaaa                                 ]
[+] EMBL BI800793             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATGGGCCTTGCATGAGCTCATCAATGCTACTACTC   CAAAGAC AAAAACTGTTTCTTTTCATTTCTGATCTTAAGTTCATCACAACTGGTGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTTGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAATAAaaa                         ]


>consensus_9856#0 AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCG GAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGA GCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCG GAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTAC TGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGC GTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTC GGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGAT GCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAG GATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTG GTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAG AAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTG CAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCT GAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATG GCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATG CCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACA AAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGA CTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAAGCCATTGGA AGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTG CAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence
                              [ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA]

[+] EMBL BM419048             [ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTGGTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGACATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCTNGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCAGGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA]


>consensus_9856#1 ATAAGACAAGAGTANGCCTCAGCTAAGCCATGGCTTCATGAGCTCATCAATTGGCTGACT ACTCCGAAGACAGGAAACGTGTTTCTGTTCATGTTCTGATCTTAAGTTCATCAACAACTG GTGGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTA TTGCTAACCACTTTGAAGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAACGAC ATGCCAAAGAAGAGTCAAATTAGTAGTGTTTCGGCCCATTCTGCTTTCATAGAGAAAGCT NGTTTCACANCTGCAAGTTTGGATTTGAATGTTGATCTTTCGTTGAGTTCTCGCTCATCA GGGCTTCTAACTGCCAAGTTATGGTTTGTAATTGGGGTTGTAATTGCAGAATTCAGGATG ATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9856#0      AAAATCGCATCCGATCCGAATCCGGCGAGCCGAATCAAATCCTCCCCTCGAGCACCAGCG 60
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GAGCGGAGGAGCGAATTCGCCGGAGACGAGACCCCTCGCCGTCGTCGATTCCCCAGGCGA 120
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GCCCGTGCATTCGTTCCTCCGCGGCGAGCAGAAGCGGTGCGCCTGCCTGCGATGGCGGCG 180
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GAGAAGCCGGCTCCGGTGAGGGTGCTGTACTGCGGCGTCTGCGGCCTCCCCGCGGAGTAC 240
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      TGCGAGTTCGGCCCGGACTTCGAGCGCTGCAAGCCGTGGCTCCGCGCCAACGCCCCGGGC 300
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GTCTACCCCGACGAGCTCCTCGCCTCCTCCTCCTCCGCCGCCGCCGACGTCGACAAGGTC 360
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GGGGAGCGGCTTCAGGGCGTCGGGATCTCCGCCGCCGATGGCTCCACCAGTGCAGGGGAT 420
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GCTTCTGCGTCGAAGCAGGAAGAGGTGAAGCGCTTGCCTGGTGGTAAGGTCAAGAAGAAG 480
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GATAAACAAGAGGTTGTGATTGAGAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTG 540
consensus_9856#1      ------------------------------------------------------------
                                                                                  

consensus_9856#0      GTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTTCAAAGAAGCTGGGGAAG 600
consensus_9856#1      ------------------------ATAAGACAAGAGTANGCCTCAGCTAAGCCATGG--- 33
                                               * *  *      * ** ***   ****   **   

consensus_9856#0      AAGTTTGCTACAGGAGCATCTGTTG-TTAAGGGCCCCACTGAGAAGGAGCAAATTGATGT 659
consensus_9856#1      -----CTTCATGAGCTCATCAATTGGCTGACTACTCCGAAGACAGGAAACGTGTTTCTGT 88
                               *   *  ****  ***  * *   * **   ** * * * *   **  ***

consensus_9856#0      GCAAGGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACC 719
consensus_9856#1      TCATGTTCTGATCT----TAAGTTCATCAACAAC-TGGTGGTTATATCGACAACTGGTCC 143
                       ** *     ** *    * *  ** *  *   * *    * **  * * *   **  **

consensus_9856#0      TGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTAT 779
consensus_9856#1      CATGTGTATCAACTTTATCCT-------GCAAGTTAGTTTGGTATTGCTAACCACTTTGA 196
                         **    **  *** ** *       * ***  ** **  *  ****      ***  

consensus_9856#0      GGCCACAAGGCAGAATACCA--ATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGT 837
consensus_9856#1      AGTGGCAATGTTTTGTGCGAGCATCAGGCTTCATATTNAAC-GACATGCCAAAGAAGAGT 255
                       *   *** *     * * *  **   * * ** **  *   ** **   * * ******

consensus_9856#0      ATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAG 897
consensus_9856#1      -------CAA-------ATTAGTAGTGTTTCGGCCCATT-------CTGCT--TTCATAG 292
                             **        **  *   **  *  ** ***        ** **  **** **

consensus_9856#0      ACAAAAAACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGA 957
consensus_9856#1      A--GAAAGCTNGTTTC--ACANCTGCAAGTTTGGATTTG--AATGTTGATCTTTCGTTGA 346
                      *   *** **  ****   **  *      **   **    *    ** * ***  * **

consensus_9856#0      GGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTA-GTTTGGTATTGCTAAGCCAT 1016
consensus_9856#1      GTTCTCG-CTCAT---CAGGGCTTCTAACTGCCAAGTTATGGTTTGTA--ATTGGG--GT 398
                      *  ** * * ***    *     * ** *   ******* * ** ***    *  *   *

consensus_9856#0      TGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCT--TCATATTTAACGACATGCAAAGA 1074
consensus_9856#1      TGTAATTGCAGAATTCAGGATGATCATAATAGGGTGTTTTTGTTTCCCANCACTAAAAAA 458
                      ** ** **   ***      **     *  *** *  *  * ***  *  **   *** *

consensus_9856#0      AGAGTGCAAAAAAAAAAAAAAAAAAAAAA 1103
consensus_9856#1      AAAA------------------------- 462
                      * *                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)