These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG] [+] EMBL CB635716 [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG] consensusID : consensus_986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC] [+] EMBL CB661200 [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_986#0 ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAA 60 consensus_986#1 ------------------------------------------------------------ consensus_986#0 CCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACC 120 consensus_986#1 ------------------------------------------------------------ consensus_986#0 TAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGT 180 consensus_986#1 ------------------------------------------------------------ consensus_986#0 AGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAAT 240 consensus_986#1 ------------------------------------------------------------ consensus_986#0 AACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAA 300 consensus_986#1 ------------------------------------------------------------ consensus_986#0 CGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACT 360 consensus_986#1 ------------------------------------------------------------ consensus_986#0 GGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGT 420 consensus_986#1 -------------------------------------------------AAACATCGGCT 11 **** *** * consensus_986#0 TCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAG 480 consensus_986#1 TCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAAT 71 ***** **** * **** ***** *********** ************ ********** consensus_986#0 AAAAGG-CTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGG 539 consensus_986#1 AAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGG 131 ****** **************** ********* ***** ********* ********* consensus_986#0 TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGC 599 consensus_986#1 TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGC 191 ************************************ *********************** consensus_986#0 CAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCAT 659 consensus_986#1 CAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCAT 251 *************************** ***** **** ****** ************* consensus_986#0 TTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAG-AGAGGGCGCGCGGACCG 718 consensus_986#1 TTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCG 311 ****************** * **** ************ * ** ************** consensus_986#0 GGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG------------- 765 consensus_986#1 GGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCC 371 ****** ************** * * ********************* consensus_986#0 ------------------------------------------------------------ consensus_986#1 GGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCG 431 consensus_986#0 ------------------------------------------------------------ consensus_986#1 GCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCG 491 consensus_986#0 ------------------------------------------------------------ consensus_986#1 CGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCG 551 consensus_986#0 ------------------------------------------------------------ consensus_986#1 GCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCA 611 consensus_986#0 - consensus_986#1 C 612 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||