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Oryza sativa
cluster # 986 cluster # 986       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_986#0 length = 765 sequences # 1  
consensus_986#1 length = 612 sequences # 1  

consensusID : consensus_986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG]

[+] EMBL CB635716             [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG]


>consensus_986#0 ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAA CCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACC TAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGT AGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAAT AACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAA CGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACT GGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGT TCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAG AAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGT TCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCC AAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATT TAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGG TCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG



consensusID : consensus_986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC]

[+] EMBL CB661200             [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC]


>consensus_986#1 AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGAC CAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGC ACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGA GTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCG AATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGG CGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGAC CGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGA GGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGG CCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGG CCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGG TCCACGGCTCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_986#0      ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAA 60
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      CCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACC 120
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      TAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGT 180
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      AGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAAT 240
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      AACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAA 300
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      CGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACT 360
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      GGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGT 420
consensus_986#1      -------------------------------------------------AAACATCGGCT 11
                                                                      ****  *** *

consensus_986#0      TCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAG 480
consensus_986#1      TCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAAT 71
                     ***** **** * **** ***** *********** ************ ********** 

consensus_986#0      AAAAGG-CTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGG 539
consensus_986#1      AAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGG 131
                     ****** **************** ********* *****  ********* *********

consensus_986#0      TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGC 599
consensus_986#1      TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGC 191
                     ************************************ ***********************

consensus_986#0      CAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCAT 659
consensus_986#1      CAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCAT 251
                     *************************** ***** ****  ****** *************

consensus_986#0      TTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAG-AGAGGGCGCGCGGACCG 718
consensus_986#1      TTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCG 311
                     ******************  *  **** ************ * ** **************

consensus_986#0      GGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG------------- 765
consensus_986#1      GGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCC 371
                     ****** ************** * * *********************             

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCG 431
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCG 491
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      CGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCG 551
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCA 611
                                                                                 

consensus_986#0      -
consensus_986#1      C 612
                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)