These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence [GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGTGGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGTCAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGTCGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAGTCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTAAATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGGTTGTCGATTACCACTTATTTACCAATTTATCCTATTCCTTTTCATCTACTCCTGTCTTTATATCAATTCCCACTTCTTCCCCTATACCCTTACTCGTTTATTTTCACCTCTCCTATATTTCTCTTCTCTCTTTTTCTCCTCATTTCATTGATAACATCACCTTTCTCATACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACACTCATCCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAATACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACTTCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTCACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCCACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA] [+] EMBL CA756895 [GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGTGGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGTCAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGTCGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAGTCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTAAATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGGTTGTCGATTACCACTTATTTACCAATTTATCCTATTCCTTTTCATCTACTCCTGTCTTTATATCAATTCCCACTTCTTCCCCTATACCCTTACTCGTTTATTTTCACCTCTCCTATATTTCTCTTCTCTCTTTTTCTCCTCATTTCATTGATAACATCACCTTTCTCATACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACACTCATCCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAATACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACTTCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTCACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCCACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA] consensusID : consensus_9861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 773 fasta sequence [TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC-GCCACCTTCGTGCTCA-CGCAGACGTTCCTCG-CCATG-CTGTGCA-GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC-GC-GGCACTGGTACTGGCGGCGCTTCGTGCAGCC-GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC-AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC-AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTTAAAAAAAAAACAAGACTTGTCGAGGATGGATTCTAATCAAAAAAAAAA] [-] EMBL CB647771 [TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC GCCACCTTCGTGCTCA CGCAGACGTTCCTCG CCATG CTGTGCA GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTT ] [-] EMBL CB647416 [ CTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC GCCACCTTCGTGCTCA CGCAGACGTTCCTCG CCATG CTGTGCA GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTT ] [+] EMBL BI813366 [ GCGGGCCAGGGGATCAGCGGTGCCGTCAACCTCGGCTGCCACCTTCGTGCTCATCGCAGACGTTCCTCGTCCATGTCTGTGCACGCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCATAGGGGTGCCGCTCGA GCCATGGGCGCCGTCT GGC GCTGGCACTGGTACTGGCGGCGCTTCGTGCA CC GCCACC GCGGCCAA GACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTTACCAAGATTGCAAGACTTGTCGAGGATGGATTCTAATCAAAAAAAAAA] [+] EMBL BM419046 [ tccagGTCTGGGCAGCAGGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCCTGTGNCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAACAAAATCCAAAGTCCGTNTTCTATTTTAGTTTCTTAAAAAAAAAA ] [+] EMBL BM419924 [ ccgGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCCAGCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGACAAACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AATCC AAGTCCGTGTTCTATTTTAGTTTCTTAAAAAAAAAA ] [+] EMBL BM421910 [ ccgGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC ACGTATACTGTACGTGTTCTATGCCTTGACCGTGTGGCCNCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AATCC AAGTCCGTNTTCTATTTTAGTTAATTAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9861#0 ------------------------------------------------------------ consensus_9861#1 TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCC 60 consensus_9861#0 ------------------------------------------------------------ consensus_9861#1 AGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGG 120 consensus_9861#0 ---GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGT 57 consensus_9861#1 CGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGT 180 *** *** * ********* ***** * ****** * * ****** ******** consensus_9861#0 GGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGT 117 consensus_9861#1 GGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGT 240 ***************** ********************************* ******* consensus_9861#0 CAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGT 177 consensus_9861#1 CGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGCGCCACCTTCGTGCTCACGCAGA 300 * ********** *** * **** ** ** ***** * *** ** *** ** *** consensus_9861#0 CGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAG 237 consensus_9861#1 CGTTCCTCGCCATGCTGTGCAGCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGG 360 **** ** ******* *** * ********* *** ** ****** * * * * consensus_9861#0 TCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTA 297 consensus_9861#1 TCGCCGTCATGAC-CGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTC 419 ** ** ****** ** ** * ***** **** ** ** * * ** ** consensus_9861#0 AATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGG 357 consensus_9861#1 GAGGCCATGGGCGCCGTCTGGGCGCGGCACTGGTACTGGCGGCGCTTCGTGCAGCC---G 476 * **** * * * ***** * *** * ** * ** ** * *** * * consensus_9861#0 TTGTCGATTACCACTTATTTACCAATTTATCCTAT-TCCTTTTCATCTACTCCTGTCT-T 415 consensus_9861#1 CCACCGGCGGCCAAGGAC--GCCATGCTGCCGGAGGTCCTCGTGAACTGACAACGTATAC 534 ** *** * *** * * * **** * * ** ** * consensus_9861#0 TATATCAATTCCCACTTCTTCCCCTATACCCTTACT-CGTTTATTTTC----ACCTCTCC 470 consensus_9861#1 TGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGT 594 * ** *** * * ** * * * ** * ** *** * * * consensus_9861#0 TATATT---TCTCTTCTCTCTTTTTCTCCTCATTTCATTGAT-AACATCACCTTTCTCAT 526 consensus_9861#1 AAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTT 654 * *** *** * *** *** * * *** * * ** * ** * * consensus_9861#0 ACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACAC-TCAT 585 consensus_9861#1 GTCCTCTTGCGAAAAATTTGTATT--GTTTACATATGAACAAATCCAAAGTCCGTGTTCT 712 ** * * *** ** *** * * * * * * * * * consensus_9861#0 CCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAAT 645 consensus_9861#1 ATTTTAGTTTCTTAAAAAAAAA--ACAAGACTTGTCGAGGATGGATTCTAATCAAAAAAA 770 ** ** **** * ** *** * * *** * ***** consensus_9861#0 ACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACT 705 consensus_9861#1 AAA--------------------------------------------------------- 773 * consensus_9861#0 TCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTC 765 consensus_9861#1 ------------------------------------------------------------ consensus_9861#0 ACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCC 825 consensus_9861#1 ------------------------------------------------------------ consensus_9861#0 ACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA 874 consensus_9861#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||