cluster # 9865

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Oryza sativa
cluster # 9865 cluster # 9865 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9865#0 length = 920 sequences # 3

consensus_9865#1 length = 748 sequences # 2
consensus_9865#2 length = 192 sequences # 2

consensusID : consensus_9865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 920
fasta sequence

                              [ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCACGGAGATCG-CGGA-CATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGG-GCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCT-CGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG]

[+] EMBL AK071589             [ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCACGGAGATCG CGGA CATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGG GCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCT CGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG]
[+] EMBL AU085931             [                                                                                                                                                                                                                                           gnacaaagaGGCCCNCGGAGATCGCCGGANCATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGCCCCCGTTGTTAACTCCCTCCGCNGNAACCCCAAGGCCTGGCTCCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGNC NNTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATAaaaa                            ]
[+] EMBL CB623348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGAACTTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG]




>consensus_9865#0
ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAAC
CAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAG
CTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGG
ACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCG
AGGTGGTCCACGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTAT
GGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAG
TTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATC
GCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACG
GCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGC
TATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTT
ATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAA
GTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATC
CAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAG
TGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGT
GTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGAT
TAATTAATAATGTATTGTCG

consensusID : consensus_9865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 748
fasta sequence

                              [AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCGGCCTGTCCGGCGCCAACG-CCCCTCCG-CCTCGTCCTCACCGCCGGCCTCG-CGANGTCGCCGCC-GNGCCATCTCCATGGG-CTCGGAGGGTATCTGGCGGCGAAGAGC-NCGCCGA-CACTAACACCGC-AACTGAAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT]

[+] EMBL C73082               [AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCGGCCTGTCCGGCGCCAACG CCCCTCCG CCTCGTCCTCACCGCCGGCCTCG CGANGTCGCCGCC GNGCCATCTCCATGGG CTCGGAGGGTATCTGGCGGCGAAGAGC NCGCCGA CACTAACACCGC AACTGA                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB617840             [  GCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGCCGCCGGCCTGTCCGGCGCCAACGCCCCCTCCGCCCTCGTCCTCACCGCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT]




>consensus_9865#1
AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCAT
TAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAG
CAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCT
GCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCAT
CATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCGGCCTGTCCGGCGC
CAACGCCCCTCCGCCTCGTCCTCACCGCCGGCCTCGCGANGTCGCCGCCGNGCCATCTCC
ATGGGCTCGGAGGGTATCTGGCGGCGAAGAGCNCGCCGACACTAACACCGCAACTGAAGA
GGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAGATCGCGGACATAC
TGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCA
ACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAGC
CAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGG
TGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCG
TCGTCACGCTCGCCGCACTTCTCTTCTT

consensusID : consensus_9865#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 192
fasta sequence

                              [AAAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCCCATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA]

[-] EMBL CF330003             [AAAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCCCATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA]
[+] EMBL CF330004             [           TGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCAAAAAAAAAAAA ]




>consensus_9865#2
AAAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATT
GCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATG
TTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCCCATGTACACGAGTGTAATCCCTCA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9865#0      ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAAC 60
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      CAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAG 120
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      CTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGG 180
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      ACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCG 240
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      AGGTGGTCCACGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTAT 300
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      GGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAG 360
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      TTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATC 420
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      GCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACG 480
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      GCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGC 540
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      TATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTT 600
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      ATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAA 660
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ------------------------------------------------------------
                                                                                  

consensus_9865#0      GTACTGTAGCCGGAGCTCCGGCTGCAGGC---ATCCAAGTAAATGTAATTAATTTAGC-- 715
consensus_9865#2      -----------AAAGCTCCGGCTGCAGGC---ATCCAAGTAAATGTAATTAATTTAGC-- 44
consensus_9865#1      ------------AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTT 48
                                   ****   *    *  *      * ** **** **** **   ***  

consensus_9865#0      AGATCCAATAAGTA-TTGCAGAAATGTATGTA---TAAGTATTTATGTAC--GTTTGCT- 768
consensus_9865#2      AGATCCAATAAGTA-TTGCAGAAATGTATGTA---TAAGTATTTATGTAC--GTTTGCT- 97
consensus_9865#1      AGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTA 108
                      ****   ** * **  *  * * *  ** *     ***  **  * *  *  * **  * 

consensus_9865#0      GCGTGCTTGTAGT-GTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTAC 827
consensus_9865#2      GCGTGCTTGTAGT-GTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCC 156
consensus_9865#1      GCTAAGCAGTAGCAGCAGCAGAAGATC-GAAGATGGTGAAGGAGTTCGTGCAGGACGAGG 167
                      **      ****  * *  * * * ** * ** **     * **** *  *     *   

consensus_9865#0      CATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTAT 887
consensus_9865#2      CATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA------------------------ 192
consensus_9865#1      AGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGG 227
                              **  **   *    *                                     

consensus_9865#0      ATTCGGTTGGGATTAATTAATAATGTATTGTCG--------------------------- 920
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      TCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCG 287
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      GCCTGTCCGGCGCCAACGCCCCTCCGCCTCGTCCTCACCGCCGGCCTCGCGANGTCGCCG 347
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      CCGNGCCATCTCCATGGGCTCGGAGGGTATCTGGCGGCGAAGAGCNCGCCGACACTAACA 407
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      CCGCAACTGAAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAG 467
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      ATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAAC 527
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      TCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTG 587
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      GAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTG 647
                                                                                  

consensus_9865#0      ------------------------------------------------------------
consensus_9865#2      ------------------------------------------------------------
consensus_9865#1      GTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATG 707
                                                                                  

consensus_9865#0      -----------------------------------------
consensus_9865#2      -----------------------------------------
consensus_9865#1      GCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT 748