These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1701 fasta sequence [ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAATCTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTCAGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTTTCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAATGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATCTACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACATCCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAGTATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCACTGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG-CGTGT-GCCCCTAAATGCA-TTCCGGCAA-GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATCTTTCTAATTCGCCTTAAAAAA] [+] EMBL AK059281 [ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAATCTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTCAGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTTTCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAATGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATCTACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACATCCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAGTATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCACTGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG CGTGT GCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCA ] [+] EMBL AF140497 [ TTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGAACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGTGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCG CATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAGCCGTGT GCCCCTAAATGCATTTCCGGCAAGGGAAATTTCAACAGAGT ] [+] EMBL D42365 [ TGACCGTTAAC GTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGC ] [+] EMBL BP185016 [ acgAGG AGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG CGTGT GCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAA ] [+] EMBL OS1484A [ ccG CGTGTNGCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTNAGCCTNANTAATATCAG ] [+] EMBL AU082662 [ CTCTAGTTGCCATTAACTACCTGTGNCTAGCTAGATATGTAGGNTTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCNGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATCTTTCTAATTCGCCTTAAAAAA] consensusID : consensus_9880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [GACCCGGAGGTTTCAGCTTAGGAGTGGCGACTGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAACTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCGGTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCCGTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA758023 [GACCCGGAGGTTTCAGCTTAGGAGTGGCGACTGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAACTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCGGTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCCGTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9880#0 ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAAT 60 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTC 120 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 AGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTT 180 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAA 240 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATC 300 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACAT 360 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAG 420 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCAC 480 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATG 540 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 AATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTC 600 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTG 660 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 GTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCAC 720 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 AAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAA 780 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 GGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTC 840 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCAT 900 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 GGCTGCTTTTCATAGCTGATAATGGTATTGGGAAGCGTGTGCCCCTAAATGCATTCCGGC 960 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 AAGGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAG 1020 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGG 1080 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGT 1140 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAG 1200 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 CCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAA 1260 consensus_9880#1 ------------------------------------------------------------ consensus_9880#0 TATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAG 1320 consensus_9880#1 -----------------------------GACCCGGAGGTTTCAGCTTAGGAGTGGCGAC 31 *********** ****************** consensus_9880#0 TGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGG 1380 consensus_9880#1 TGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGG 91 ********* ************************************************** consensus_9880#0 CGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAA 1440 consensus_9880#1 CGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAA 151 ******************* ********* *********** *** ************** consensus_9880#0 CTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAAC 1500 consensus_9880#1 CTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAAC 211 ** *********************** ****** ************************** consensus_9880#0 CGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCG 1560 consensus_9880#1 CGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCG 271 ********** ************ ************************** ********* consensus_9880#0 CTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCC 1620 consensus_9880#1 GTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCC 331 ** ** *** *********** ** ******************** *** ********* consensus_9880#0 GTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATC 1680 consensus_9880#1 GTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 382 **** ****** ******* * * * * * consensus_9880#0 TTTCTAATTCGCCTTAAAAAA 1701 consensus_9880#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||