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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 823 fasta sequence
[AGGACGAGACAAGGGGGATGAACGTTCTGCTATTATTAAGCAACTGGCTGGGCAGATTGTGAAGATGAGCCAACAGAAATTTGCTTCCAATGTTGTTGAGAAGTGCCTTTCCTTCGGTAGTCCTGAGGAGCGCCA-GATTCTAATT-AATGAAATGCTTGGCACAACTGACGAGAATGAG-CCATTACAGGCAATGATGAAAGACCA-GTTTGCTAACTACGTGGTGCAGAAGGTTTTGGAGACTTGTGATGACCAGA-ACCGTGAATT-GATCCTTTCACGT-ATCAAAGTACATTTGAATGCA-CTAAAGAGAT-ACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCT-GCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT-TTGACAGAATAACACCTGTAC-AGA-CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT-GCTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCAT-GGAAGAAATTAGTGCAAAGA-TTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTT-GCCTTGAATTTCATCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTAAAGGTTTTCTACTTAACTCACATTTTGCAGAAATCAAATGCAT-GTCTCTGTTTAAAAAAAAAAAAAAAAAAGA]
[+] EMBL CA766303 [AGGACGAGACAAGGGGGATGAACGTTCTGCTATTATTAAGCAACTGGCTGGGCAGATTGTGAAGATGAGCCAACAGAAATTTGCTTCCAATGTTGTTGAGAAGTGCCTTTCCTTCGGTAGTCCTGAGGAGCGCCA GATTCTAATT AATGAAATGCTTGGCACAACTGACGAGAATGAG CCATTACAGGCAATGATGAAAGACCA GTTTGCTAACTACGTGGTGCAGAAGGTTTTGGAGACTTGTGATGACCAGA ACCGTGAATT GATCCTTTCACGT ATCAAAGTACATTTGAATGCA CTAAAGAGAT ACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCT GCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT TTGACAGAATAACACCTGTAC AGA CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT GCTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTNCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCATGGGAAGAAATTAGTGCAAAGATTTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTTGGCCTTGNANTTCATCAGTGTATNANGGTTCATGANGGTTCATCTCTGGAAAGGTTTTCTACTTAACTCACATTTTGCAGA ]
[+] EMBL BM419044 [ TTTTGNAGATGA CC ACAGAAATTTGCTTCCAATGTTGTTGAGAAGTGCC TTCCTTCGGTAGTCCTGAGGAGCGCCACGATTCTAATTNAATGAAATGCTTGGCACNACTGACGAGAATGAGCCCNTTACAGGCAATGATGAAAGACCACGTTTGCTAACTACGTGGTGCAGAAGGTTTTGGAGACTTGTGATGACCAGAGACCGTGAATTGGATCCTTTCACGTGATCAAAGTACATTTGAATGCATCTAAAGAGATGACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTNGCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCATCGGTTAGTGTTGACAGAATAACACCTGTACTAGACCTAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGACTGTCGCTTGTTCTTAAGAAAAAAaaaa ]
[-] EMBL CB671807 [ GATGAGCCAACAGAAATTTGCTTCCAATGTTGTTGAGAAGTGCCTTTCCTTCGGTAGTCCTGAGGAGCGCCA GATTCTAATT AATGAAATGCTTGGCACAACTGACGAGAATGAG CCATTACAGGCAATGATGAAAGACCA GTTTGCTAACTACGTGGTGCAGAAGGTTTTGGAGACTTGTGATGACCAGA ACCGTGAATT GATCCTTTCACGT ATCAAAGTACATTTGAATGCA CTAAAGAGAT ACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCT GCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT TTGACAGAATAACACCTGTAC AGA CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT GCTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCAT GGAAGAAATTAGTGCAAAGA TTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTT GCCTTGAATTTCATCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTAAAGGTTTTTTACTTAACTCACATTTTGCAGAAATCAAATGCAT GTCTCTGTTTAAAAAAAAAAAAAAAAAAGA]
[+] EMBL CB096802 [ ACAGGCAATGATGAAAGACC GTTTGCTAACTACGTGGTGCAGAAGGTTTTGGAGACTTGTGATGACCAGA ACCGTGAATT GATCCTTTCACGT ATCAAAGTACATTTGAATGCA CTAAAGAGAT ACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCT GCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT TTGACAGAATAACACCTGTAC AGA CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT GCTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCAT GGAAGAAATTAGTGCAAAGA TTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTT GCCTTGAATTTCATCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTAAAGGTTTTCTACTTAACTCACATTTTGCAGAAATCAAATGCATGGTCTCTGTTTA ]
[+] EMBL CB681010 [ ATCAAACTACATTTGAATGCA CTAAAGAGAT ACACCTATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCT GCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCAATGGTTAGT TTGACAGAATAACACCTGTAC AGA CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT GCTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCAT GGAAGAAATTAGTGCAAAGA TTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTT GCCTTGAATTTCATCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTAAAGGTTTTCTACTTAACTCACATTTTGCAGAAATCAAATGCAT GTCTC ]
[-] EMBL BI306519 [ AAGTACATTTGAATGCA CTAAAGAAAT ACCCCTATGGGAAACATATTGTTGCACGGGTTGAAAAGCTTATTGCT GCAGGAAAAAGGCCCAGTGGAGTGTTTTCGTCATTTTCGTGAGATTGCAATGGTTAGT TTGACAGAATAACCCCTGTAC AGA CAAAAAGCGAGGCTACCCTTCCCTGTAGTCTTGTTGGGTTAAATCGGAAAAGTTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTTTGGAAATAAAAAGGAGAAAGTGT GCTTGTTTTTAAAAAAAAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAGCAT GGAAGAAATTAGTGCAAAAA TTTAGGATAAATGATGGGAAGCAAGGACCCCTGTAGATCCTTTT GCCTTGAATTTCATCAGGGTATAAGGTTTCATGAGGTTTCATTTCTGTAAAGGTTTTTTACTTAACTCACATTTTGCAGAAATCAAAAGCAT GTCTCT ]
[+] EMBL AU174959 [ CAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCGTGAGATTGCNATGGTTAGT TTGACAGAATAACNCCTGTAC AGA CAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGGGTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGT GCTTGTTNTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCNAAGCAT GGAAGAAATTAGTGCAAAGA TTTAGGATAGATGATGGGAAGCAAGGACNCCTGTAGATCCTTTT GCCTTGAATTTCATCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTAAAGGTTTTNTACTTAACTCACATTTTGCAGAAATCAAATGCAT GTCTCTGTTTATCAGAATTGAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||