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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence
[TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGAGCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCGCGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGGCGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGGAGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCGACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCGGCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAGGGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGATGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTGAGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCGATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGTGGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGAGCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCCGCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGAGCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGGTTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGCAGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGACGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGGAGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGATCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGCTCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGATCAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGATTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAAATCAGTTGCTTTGGTGATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTGTAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG]
[+] EMBL AK109719 [TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGAGCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCGCGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGGCGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGGAGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCGACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCGGCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAGGGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGATGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTGAGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCGATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGTGGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGAGCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCCGCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGAGCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGGTTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGCAGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGACGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGGAGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGATCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGCTCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGATCAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGATTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAAATCAGTTGCTTTGGTGATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTGTAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG]
consensusID : consensus_9890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 455 fasta sequence
[CGTGGTCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG-CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAAAAAAAAAGA]
[+] EMBL CB964725 [CGTGGTCGTCGGCGGTGTAGGCG CGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCTTCGGATCCTAACCACGAGGCAGGCGGCGCGGGCGCCTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGACACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAACAACAACAA ]
[+] EMBL BU673272 [ GTCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAA ]
[+] EMBL CB964438 [ TCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGACAAAAccaccaa ]
[+] EMBL BI305714 [ CGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAAAAAAAAAGA]
consensusID : consensus_9890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 370 fasta sequence
[CTGGATGAGCCACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGC-AGC-AGTCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTCTGCAGCAGACGCTGGGAGACACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACGCGACAACCGTCACCACTACAGGG]
[+] EMBL OS37997 [CTGGATGAGCCACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGC AGC AGTCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTCTGCAGCAGACGCTGGGAGACACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACGCGACAACCGTCACCACTACAGGG]
[+] EMBL OS37999 [ CACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGCAAGCAAGTCAACGCAGCAag ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9890#0 TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGA 60
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCG 120
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 CGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGG 180
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 CGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGG 240
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 AGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCG 300
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 ACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCG 360
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAG 420
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGA 480
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 TGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTG 540
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 AGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCG 600
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 ATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGT 660
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGA 720
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCC 780
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGA 840
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 GCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGG 900
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 TTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGC 960
consensus_9890#1 ------------------------------------------------------------
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 AGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGA 1020
consensus_9890#1 ---------------------------CGTGGTCGTCGGCGGTGTAGGCGC--CGACA-A 30
consensus_9890#2 ------------------------------------------------------------
consensus_9890#0 CGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCG 1080
consensus_9890#1 CGTCACCAACTACATGGG-ACAGATGGCCATCGCCATGGCCA-TGCTCACCACGCTG--G 86
consensus_9890#2 ----------------------------------------CTGGATGAGCCACGCTG--- 17
* * ** *
consensus_9890#0 ACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGG 1140
consensus_9890#1 AGAACTTCCTCAA--GCTTCGGTCAAACATCAATGGCGA--ACTAAATTGCTTATTACCA 142
consensus_9890#2 AGCGCTTCTTCATGTGGCTCGGC--AGCTTCTGTTGCT----CTGAGCTCCTCAAGGTT- 70
* * ** ** * ** * * ** * * * *
consensus_9890#0 AGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGA 1200
consensus_9890#1 TGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGA 202
consensus_9890#2 TGACACGA-GTGATCACCCACCCAATTCAGT--AACAAGCAAAGAATCTGAAGCTACCAT 127
* * * * * * * * ** ** *
consensus_9890#0 TCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGC 1260
consensus_9890#1 TCCTAACCACGAGGCAGGCGGCGCGGGCGCTGCTCGTCATCAACGACTACTTCTCGTGGC 262
consensus_9890#2 TGACTGCTATT-GTTGAATGATGATGATGATGTTGTTTGT--GCAGGTACTT---GAGAG 181
* * * * * * * * ** * * * * ***** * *
consensus_9890#0 TCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGAT 1320
consensus_9890#1 TCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAG 322
consensus_9890#2 CC---ATCTTGAGC-CGCTGACGAATCAGCAGTTGATGGGCATCTGCAACC-TGCAGCAG 236
* * *** ***** * ** * ** ** * ** * *
consensus_9890#0 CAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGA 1380
consensus_9890#1 AGCGCGCATCGCACCGA--CCGCGCCCCCGGCGGCACGGCCAGGTA----CGCGCCGCAG 376
consensus_9890#2 TCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTC------TGCAGCAG 290
** * ** * * ** *
consensus_9890#0 TTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAA-ATCAGTTGCTTTGGT 1439
consensus_9890#1 CCACTGCATCC--------CGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCC 428
consensus_9890#2 ACGCTGGGAGAC---ACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACG 347
*** * * *** * * * * *
consensus_9890#0 GATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTG 1499
consensus_9890#1 CAAGAGGAAAAAAAAAAAAAAAAAAGA--------------------------------- 455
consensus_9890#2 CGACAACCGTCACCACTACAGGG------------------------------------- 370
* * * *
consensus_9890#0 TAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG 1546
consensus_9890#1 -----------------------------------------------
consensus_9890#2 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||