These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence [CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAATATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAAGGGGACAAGGATGACATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCCAAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTTATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCACGGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA] [+] EMBL OSR28751A [CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAATATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAA ] [+] EMBL AK111758 [ ATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGCACAGAACAAGGGGACAAGGATGACATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCCAAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTTATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCACGGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGACCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAA ] [+] EMBL C99455 [ CGAGATAGCACTCAATTGCATTGCCAGTGACACAAGNNACCGGNCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCT ] [+] EMBL C22603 [ CATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA] consensusID : consensus_9896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 298 fasta sequence [GGGCGGACGCGTGGGTGACTAAGCCAAAAAAGAGGCAATTTCAC-TCTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGT--TCATTTTTTTTTCCCTTGTTGCTC-AAGTTGTAACATTCCATCCAGCTAGAGC-ATTAAGACCCAAATTATTGGACCCAAAAAAAAAAAAAAACAACAAAANN] [+] EMBL BI796412 [GGGCGGACGCGTGGGTGACTAAGCCAAAAAAGAGGCAATTTCAC TCTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGT TCATTTTTTTTTCCCTTGTTGCTC AAGTTGTAACATTCCATCCAGCTAGAGC ATTAAGACCCAAATTATTGGACCCAAAAAAAAAA ] [+] EMBL CA764549 [ CAAAAAAGAGGCAATTTCACTTCTCCGAGTC AGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGTTCTCTTTTTTTTTTCCCTTGTTGCTCAAAGTTGTAACATTCCATCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAAAAAAAAAAAAAAAACAACAAAANN] consensusID : consensus_9896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTNACATTCCAGCTNGNGCNATTNAGNCCNAAATTNTTGGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99456 [CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTNACATTCCAGCTNGNGCNATTNAGNCCNAAATTNTTGGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9896#0 CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAA 60 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 TATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCA 120 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 TCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCAT 180 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 TGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAA 240 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 TGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTT 300 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 TAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGC 360 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 CACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAAGGGGACAAGGATGA 420 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 CATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCC 480 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 AAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTT 540 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 ATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCAC 600 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 GGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGA 660 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 GGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGA 720 consensus_9896#1 ------------------------------------------------------------ consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 GAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTT 780 consensus_9896#1 ---------------GGGCGGA-CGCGTGGGTGACTAAGC-CAAAAAAGAGG--CAATTT 41 consensus_9896#2 ------------------------------------------------------------ consensus_9896#0 CACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCT 840 consensus_9896#1 CACT-CTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCT 100 consensus_9896#2 -----CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCT 55 ***** ******* ********* ***** ************************* consensus_9896#0 GTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 900 consensus_9896#1 GTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 160 consensus_9896#2 GTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 115 *********** ** ****** ************************************** consensus_9896#0 GGTGTGTGTGTGTTCGTCCTTTT-CCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTT 959 consensus_9896#1 GGTGTGTGTG--TTCGTCCTTTT-CCTCGTGTATAGAAGTTCATTT---TTTTTTCCCTT 214 consensus_9896#2 GGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTT 175 ********** *********** *** **** ********* ** ***** * *** consensus_9896#0 GTTGCTCAAAGTTGTAACATTCCA----GCTAGAGCAATTAAGACCAAAATTATTGGACC 1015 consensus_9896#1 GTTGCTCAA-GTTGTAACATTCCATCCAGCTAGAGCA-TTAAGACCCAAATTATTGGACC 272 consensus_9896#2 GTTGCTCAAAGTTGTNACATTCCA----GCTNGNGCNATTNAGNCCNAAATTNTTGGNCC 231 ********* ***** ******** *** * ** ** ** ** ***** **** ** consensus_9896#0 AATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA- 1070 consensus_9896#1 CAAAAAAAAAAAAAAACAACAAAANN------------------------------ 298 consensus_9896#2 NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 287 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||