|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence
[ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG]
[+] EMBL AK058882 [ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG]
consensusID : consensus_9897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 368 fasta sequence
[ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA-CTGGTACGGCCCGCTCGCCGTCTAC-TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]
[+] EMBL AU108098 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]
[+] EMBL AU062525 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGG GACCGNCGA CTGGTACGGCCCGCTCGCCGTCTACTTGGGGTCG CACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGNTCCCGTNATCCCAGTTGGCNGCCG ]
[+] EMBL AU063190 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTNGTCGTGTCCTGCCTCGCCGCGCCGG NAATGCCGA CTGGTACGGCCCGCTCGCNGTCTAC TNGGGTCGCCACAAGGACTACGATGGCTCCCTGAGAGAGGCCTGCAACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGTCTCGANATCTCCGGCCANCCGGTCG ]
[+] EMBL AB027426 [ ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGA ]
[+] EMBL C29113 [ ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGGAACGG CGANCTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGANGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGNCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCG ]
[+] EMBL AU161108 [ CGGCGACGGCCGA NTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9897#0 ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCC 60
consensus_9897#1 ----------------------------------ATATGATGGGCCTCCTG-----AGCT 21
* **** ** ***** ***
consensus_9897#0 GCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTC 120
consensus_9897#1 ----TGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGACTGGTACG-- 75
******** ***** * ******** **** ** ****** * ****
consensus_9897#0 GGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAG---GAGGGCTCGTTGCGCGAGGCC 177
consensus_9897#1 -GCCCGCTCGCCGTCTACTGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCC 134
*** ********* * ****** *********** ******** ** * ******
consensus_9897#0 TGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAG 237
consensus_9897#1 TGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTC 194
************** ******* **** *************** *************
consensus_9897#0 CGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 297
consensus_9897#1 AAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 254
****************** **************************************
consensus_9897#0 AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAG 357
consensus_9897#1 AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGG 314
********************************************************** *
consensus_9897#0 TACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTAC 417
consensus_9897#1 TACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC------ 368
************** ************ ************* ************
consensus_9897#0 CTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATC 477
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 GACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCAC 537
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 GGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAG 597
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 GCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAG 657
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 TGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACG 717
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 GTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGAT 777
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 CTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATC 837
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 TGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATC 897
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 AATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATT 957
consensus_9897#1 ------------------------------------------------------------
consensus_9897#0 CGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG 1000
consensus_9897#1 -------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||