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Oryza sativa
cluster # 9898 cluster # 9898       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9898#0 length = 1968 sequences # 5  
consensus_9898#1 length = 363 sequences # 1  
consensus_9898#2 length = 336 sequences # 1  

consensusID : consensus_9898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1968
fasta sequence
                              [TCTCTCCCCACCTCGCGCCTTTTTCGCTATTTTCCTCTCTCTCCCAGCGCGCGGCCACCGCCCTCTTCTTCTTCC-TGTTCTTCCACCACCACATCGGCGCCGCCTGTCTCATGTGGGCTTAGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCCGTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCTGTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAAGCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGACCCACCGGTCCGCCGCCGAGGCCGCCGCGGCGG-GCAGGACGAGGAAGGAGTCGTTCTTGGATTCCGCGGGGAAGGACGTTGCCCGGATCCACACGATGCTCAGGAGGGTGGCCGGAGCAGGCGGAGGTAGGGCAGCGACGAATTCGACGCCGCGGCGCGCGCTGGCAGAGCGGATTGTGGCGACGGTGGAGTCCGGCGTCGCGGTCGGGTCCGGGGAGTACTTGGTGGATCTCTACGTCGGTACGCCGCCGCGGCGGTTCCAGATGATCATGGACACCGGCAGCGACCTCAACTGGCTGCAGTGCGCGCCCTGCCTCGATTGCTTCGAGCAGCGCGGCCCGGTGTTCGACCCGGCGGCCTCCCTTTCCTACCGCAACGTCACCTGCGGCGACCCCCGCTGCGGCCTCGTCGCGCCGCCGACGGCGCCCAGGGCGTGCCGCCGCCCGCACTCCGACCCGTGCCCGTACTACTACTGGTACGGCGACCAGTCGAACACCACCGGCGACCTCGCCCTCGAGGCCTTCACCGTCAACCTCACCGCCCCCGGCGCGTCCCGGCGCGTCGACGACGTGGTGTTCGGCTGCGGCCACTCGAACCGCGGCCTCTTCCACGGGGCCGCGGGGCTGCTCGGCCTCGGCCGCGGCGCCCTCTCCTTCGCGTCCCAGCTCCGCGCCGTGTACGGCCACGCCTTCTCCTACTGCCTCGTCGACCACGGCAGCAGCGTCGGGAGCAAGATCGTGTTCGGCGACGACGACGCGCTGCTCGGCCACCCGCGGCTCAACTACACGGCGTTCGCGCCGTCCGCGGCGGCGGCGGCGGACACATTCTACTACGTCCAGCTCAAGGGCGTCCTCGTCGGCGGCGAGAAGCTCAACATCTCGCCGTCCACGTGGGACGTCGGCAAGGACGGGTCCGGCGGCACGATCATCGACTCCGGCACGACGCTGAGCTACTTCGCGGAGCCGGCGTACGAGGTGATCCGGCGGGCGTTCGTGGAGCGAATGGACAAGGCGTACCCTCTCGTCGCCGACTTCCCGGTGCTGAGCCCGTGCTACAACGTGTCCGGCGTGGAGAGGGTGGAGGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTTCCCGGCGGAGAACTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCGCTCCGCCATGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCTGCAGAACAACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAAAAAAAAAA]

[+] EMBL AK068924             [TCTCTCCCCACCTCGCGCCTTTTTCGCTATTTTCCTCTCTCTCCCAGCGCGCGGCCACCGCCCTCTTCTTCTTCC TGTTCTTCCACCACCACATCGGCGCCGCCTGTCTCATGTGGGCTTAGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCCGTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCTGTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAAGCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGACCCACCGGTCCGCCGCCGAGGCCGCCGCGGCGG GCAGGACGAGGAAGGAGTCGTTCTTGGATTCCGCGGGGAAGGACGTTGCCCGGATCCACACGATGCTCAGGAGGGTGGCCGGAGCAGGCGGAGGTAGGGCAGCGACGAATTCGACGCCGCGGCGCGCGCTGGCAGAGCGGATTGTGGCGACGGTGGAGTCCGGCGTCGCGGTCGGGTCCGGGGAGTACTTGGTGGATCTCTACGTCGGTACGCCGCCGCGGCGGTTCCAGATGATCATGGACACCGGCAGCGACCTCAACTGGCTGCAGTGCGCGCCCTGCCTCGATTGCTTCGAGCAGCGCGGCCCGGTGTTCGACCCGGCGGCCTCCCTTTCCTACCGCAACGTCACCTGCGGCGACCCCCGCTGCGGCCTCGTCGCGCCGCCGACGGCGCCCAGGGCGTGCCGCCGCCCGCACTCCGACCCGTGCCCGTACTACTACTGGTACGGCGACCAGTCGAACACCACCGGCGACCTCGCCCTCGAGGCCTTCACCGTCAACCTCACCGCCCCCGGCGCGTCCCGGCGCGTCGACGACGTGGTGTTCGGCTGCGGCCACTCGAACCGCGGCCTCTTCCACGGGGCCGCGGGGCTGCTCGGCCTCGGCCGCGGCGCCCTCTCCTTCGCGTCCCAGCTCCGCGCCGTGTACGGCCACGCCTTCTCCTACTGCCTCGTCGACCACGGCAGCAGCGTCGGGAGCAAGATCGTGTTCGGCGACGACGACGCGCTGCTCGGCCACCCGCGGCTCAACTACACGGCGTTCGCGCCGTCCGCGGCGGCGGCGGCGGACACATTCTACTACGTCCAGCTCAAGGGCGTCCTCGTCGGCGGCGAGAAGCTCAACATCTCGCCGTCCACGTGGGACGTCGGCAAGGACGGGTCCGGCGGCACGATCATCGACTCCGGCACGACGCTGAGCTACTTCGCGGAGCCGGCGTACGAGGTGATCCGGCGGGCGTTCGTGGAGCGAATGGACAAGGCGTACCCTCTCGTCGCCGACTTCCCGGTGCTGAGCCCGTGCTACAACGTGTCCGGCGTGGAGAGGGTGGAGGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTTCCCGGCGGAGAACTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCGCTCCGCCATGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCTGCAGAACAACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAAC                    ]
[+] EMBL CB675267             [                                             AGCGCGCGGCCACCGCCCTCTTCTTCTTCCGTGTTCTTCCACCACCACATCGGCGCCGCCTGTCTCATGTGGGCTTAGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCCGTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCTGTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAAGCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGACCCACCGGTCCGCCGCCGAGGCCGCCGCGGCGG GCAGGACGAGGAAGGAGTCGTTCTTGGATTCCGCGGGGAAGGACGTTGCCCGGATCCACACGATGCTCAGGAGGGTGGCCGGAGCAGGCGGAGGTAGGGCAGCGACGAATTCGACGCCGCGGCGCGCGCTGGCAGAGCGGATTGTGGCGACGGTGGAGTCCGGCGTCGCGGTCGGGTCCGGGGAGTACTTGGTGGATCTCTACGTCGGTACGCCGCCGCGGCGGTTCCAGATGATCATGGACACCGGCAGCGACCTCAACTGGCTGCAGTGCGCGCCCTGCCTCGATTGCTTCGAGCAGCGCGGCCCGGTGTTCGACCCGGCGGCCTCCCTTTCCTACCGCAACGTCACCTGCGGCGACCCCCGCTGCGGCCTCGTCGCGCCGCCGACGGCGCCCAGAGCGTGCCGCCGCCCGCACTCCGACCCGTGCCCGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C98934               [                                                                                               CGGCGCCGCCTGTCTCATGTGGGCTTAGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCCGTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCTGTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAAGCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGACCCACCGGTCCGCCGCCGANGCCGCCGCGGCGGNGCAGGACGAGGAAGGAGTCGTTCTTGGATTCCGCGGGGAAGGACGTTGCCCGGATCCACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB675268             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACGTCGGCAAGGACGGGTCCGGCGGCACGATCATCGACTCCGGCACGACGCTGAGCTACTTCGCGGAGCCGGCGTACGAGGTGATCCGGCGGGCGTTCGTGGAGCGAATGGACAAGGCGTACCCTCTCGTCGCCGACTTCCCGGTGCTGAGCCCGTGCTACAACGTGTCCGGCGTGGAGAGGGTGGAGGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTTCCCGGCGGAGAACTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCGCTCCGCCATGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTTTACGACCTGCAGAACAACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACA                   ]
[-] EMBL AU174662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCTGCAGAACAACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCGCCGGCGCCGGCCACGAGAGGATCCNCCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTNGAAATCTCCAAGTAACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAAAAAAAAAA]


>consensus_9898#0 TCTCTCCCCACCTCGCGCCTTTTTCGCTATTTTCCTCTCTCTCCCAGCGCGCGGCCACCG CCCTCTTCTTCTTCCTGTTCTTCCACCACCACATCGGCGCCGCCTGTCTCATGTGGGCTT AGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCC GTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCT GTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAA GCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGAC CCACCGGTCCGCCGCCGAGGCCGCCGCGGCGGGCAGGACGAGGAAGGAGTCGTTCTTGGA TTCCGCGGGGAAGGACGTTGCCCGGATCCACACGATGCTCAGGAGGGTGGCCGGAGCAGG CGGAGGTAGGGCAGCGACGAATTCGACGCCGCGGCGCGCGCTGGCAGAGCGGATTGTGGC GACGGTGGAGTCCGGCGTCGCGGTCGGGTCCGGGGAGTACTTGGTGGATCTCTACGTCGG TACGCCGCCGCGGCGGTTCCAGATGATCATGGACACCGGCAGCGACCTCAACTGGCTGCA GTGCGCGCCCTGCCTCGATTGCTTCGAGCAGCGCGGCCCGGTGTTCGACCCGGCGGCCTC CCTTTCCTACCGCAACGTCACCTGCGGCGACCCCCGCTGCGGCCTCGTCGCGCCGCCGAC GGCGCCCAGGGCGTGCCGCCGCCCGCACTCCGACCCGTGCCCGTACTACTACTGGTACGG CGACCAGTCGAACACCACCGGCGACCTCGCCCTCGAGGCCTTCACCGTCAACCTCACCGC CCCCGGCGCGTCCCGGCGCGTCGACGACGTGGTGTTCGGCTGCGGCCACTCGAACCGCGG CCTCTTCCACGGGGCCGCGGGGCTGCTCGGCCTCGGCCGCGGCGCCCTCTCCTTCGCGTC CCAGCTCCGCGCCGTGTACGGCCACGCCTTCTCCTACTGCCTCGTCGACCACGGCAGCAG CGTCGGGAGCAAGATCGTGTTCGGCGACGACGACGCGCTGCTCGGCCACCCGCGGCTCAA CTACACGGCGTTCGCGCCGTCCGCGGCGGCGGCGGCGGACACATTCTACTACGTCCAGCT CAAGGGCGTCCTCGTCGGCGGCGAGAAGCTCAACATCTCGCCGTCCACGTGGGACGTCGG CAAGGACGGGTCCGGCGGCACGATCATCGACTCCGGCACGACGCTGAGCTACTTCGCGGA GCCGGCGTACGAGGTGATCCGGCGGGCGTTCGTGGAGCGAATGGACAAGGCGTACCCTCT CGTCGCCGACTTCCCGGTGCTGAGCCCGTGCTACAACGTGTCCGGCGTGGAGAGGGTGGA GGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTTCCCGGCGGAGAA CTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCG CTCCGCCATGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCT GCAGAACAACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGG CGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCG GGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATT AAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATC TCCAAGTAACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGC AGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAAAAAAAAAA



consensusID : consensus_9898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [CGTCCTCTACGACCTGCAGAACANACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGACAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCCAAGTACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAAAAAAAAA]

[+] EMBL BQ907875             [CGTCCTCTACGACCTGCAGAACANACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGACAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCCAAGTACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAAAAAAAAA]


>consensus_9898#1 CGTCCTCTACGACCTGCAGAACANACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGG TGTAAGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAA TTCGGGTTTAGGTGTGGCCAAATTTGGGACAAATTTGGGTGTAGAAATTTTGGGGGCGGA AATTAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGA AATCTCCAAGTACAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAGAT TGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAAAAAA AAA



consensusID : consensus_9898#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [GCCGGAAATTAAAGGTCCNGAGGAGGGGTTTACCCCCAAATTTNTATGTAGCCCAAAGGTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGNATAATTAGGAATACTTTTTTACCCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAGCTTGCTCTGATCTCTCTGGTGTTGATAGCTTAGTAGTACAACTAGTAGTATTGTTAGGATCGTGACATATTGGATCCTGTCGTCCTGTTTGTGTGTGATGGTTCCCCTTTCTGGGTGCAAATATTATACAGAAATCAATCATCAGAACAAAAAA]

[+] EMBL C98935               [GCCGGAAATTAAAGGTCCNGAGGAGGGGTTTACCCCCAAATTTNTATGTAGCCCAAAGGTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGNATAATTAGGAATACTTTTTTACCCAAAAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAGCTTGCTCTGATCTCTCTGGTGTTGATAGCTTAGTAGTACAACTAGTAGTATTGTTAGGATCGTGACATATTGGATCCTGTCGTCCTGTTTGTGTGTGATGGTTCCCCTTTCTGGGTGCAAATATTATACAGAAATCAATCATCAGAACAAAAAA]


>consensus_9898#2 GCCGGAAATTAAAGGTCCNGAGGAGGGGTTTACCCCCAAATTTNTATGTAGCCCAAAGGT TCGAAATCTCCAAGTAACAGAGATTTTTTTAGGNATAATTAGGAATACTTTTTTACCCAA AAAGATTGCAGTTTGTATACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCC AGCTTGCTCTGATCTCTCTGGTGTTGATAGCTTAGTAGTACAACTAGTAGTATTGTTAGG ATCGTGACATATTGGATCCTGTCGTCCTGTTTGTGTGTGATGGTTCCCCTTTCTGGGTGC AAATATTATACAGAAATCAATCATCAGAACAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9898#0      TCTCTCCCCACCTCGCGCCTTTTTCGCTATTTTCCTCTCTCTCCCAGCGCGCGGCCACCG 60
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCCTCTTCTTCTTCCTGTTCTTCCACCACCACATCGGCGCCGCCTGTCTCATGTGGGCTT 120
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      AGCCATGACGCGGCTCGCCGTGCGCTCTCTGGTGGTCTTGTTCTTGACTGTGGCCTCGCC 180
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GTTTCTTGTTGCTGGTGGTGGTGGCGCCAAGCTCAACGCGTCGTCGTCGTCGTCGCCGCT 240
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GTACGGGATCGAGTTCCCGCCGTTCAACGCCGGCGTCGCGGATGGCGGATGCGACGGGAA 300
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GCTGATGGTGCAGGGGATGGAGGAGGTGAGCCGGTCCCCTTCGCTGAAGCTGCATATGAC 360
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCACCGGTCCGCCGCCGAGGCCGCCGCGGCGGGCAGGACGAGGAAGGAGTCGTTCTTGGA 420
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      TTCCGCGGGGAAGGACGTTGCCCGGATCCACACGATGCTCAGGAGGGTGGCCGGAGCAGG 480
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CGGAGGTAGGGCAGCGACGAATTCGACGCCGCGGCGCGCGCTGGCAGAGCGGATTGTGGC 540
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GACGGTGGAGTCCGGCGTCGCGGTCGGGTCCGGGGAGTACTTGGTGGATCTCTACGTCGG 600
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      TACGCCGCCGCGGCGGTTCCAGATGATCATGGACACCGGCAGCGACCTCAACTGGCTGCA 660
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GTGCGCGCCCTGCCTCGATTGCTTCGAGCAGCGCGGCCCGGTGTTCGACCCGGCGGCCTC 720
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCTTTCCTACCGCAACGTCACCTGCGGCGACCCCCGCTGCGGCCTCGTCGCGCCGCCGAC 780
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GGCGCCCAGGGCGTGCCGCCGCCCGCACTCCGACCCGTGCCCGTACTACTACTGGTACGG 840
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CGACCAGTCGAACACCACCGGCGACCTCGCCCTCGAGGCCTTCACCGTCAACCTCACCGC 900
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCCCGGCGCGTCCCGGCGCGTCGACGACGTGGTGTTCGGCTGCGGCCACTCGAACCGCGG 960
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCTCTTCCACGGGGCCGCGGGGCTGCTCGGCCTCGGCCGCGGCGCCCTCTCCTTCGCGTC 1020
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CCAGCTCCGCGCCGTGTACGGCCACGCCTTCTCCTACTGCCTCGTCGACCACGGCAGCAG 1080
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CGTCGGGAGCAAGATCGTGTTCGGCGACGACGACGCGCTGCTCGGCCACCCGCGGCTCAA 1140
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CTACACGGCGTTCGCGCCGTCCGCGGCGGCGGCGGCGGACACATTCTACTACGTCCAGCT 1200
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CAAGGGCGTCCTCGTCGGCGGCGAGAAGCTCAACATCTCGCCGTCCACGTGGGACGTCGG 1260
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CAAGGACGGGTCCGGCGGCACGATCATCGACTCCGGCACGACGCTGAGCTACTTCGCGGA 1320
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GCCGGCGTACGAGGTGATCCGGCGGGCGTTCGTGGAGCGAATGGACAAGGCGTACCCTCT 1380
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CGTCGCCGACTTCCCGGTGCTGAGCCCGTGCTACAACGTGTCCGGCGTGGAGAGGGTGGA 1440
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      GGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTTCCCGGCGGAGAA 1500
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCG 1560
consensus_9898#1      ------------------------------------------------------------
consensus_9898#2      ------------------------------------------------------------
                                                                                  

consensus_9898#0      CTCCGCCATGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCT 1620
consensus_9898#1      ---------------------------------------------CGTCCTCTACGACCT 15
consensus_9898#2      ---------------------------------------------------------GCC 3
                                                                                * 

consensus_9898#0      GCAGAACAA-CCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCG 1679
consensus_9898#1      GCAGAACANACCGCCTCGGCTTTGCGCCGCGGCGGTGCGCCGAGGTGTAAGCCGGCGCCG 75
consensus_9898#2      GGAAATTAA-------AGGTCCNGAGGAGGGGTTTACCCCCAAATTTNTATGTAGCCCAA 56
                      * * *  *         **    * *  * **     * ** *  *   *    ** *  

consensus_9898#0      GCGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTC 1739
consensus_9898#1      ------------GCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTTTGATCGAATTC 123
consensus_9898#2      ---------------AGGTTCGAAATCTCCAAGTAACAGAGATTTTTTTAGGNATAATTA 101
                                     * *   * *  * **** *   **    *  *** *    **** 

consensus_9898#0      GGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAAT 1799
consensus_9898#1      GGGTTTAGGTGTGGCCAAATTTGGGACAAATTTGGGTGTAGAAATTTTGGGGGCGGAAAT 183
consensus_9898#2      GGAATACTTTTTTACCCAAAAAGATTGCAGTTTG--TATACAGATTTTGG---------T 150
                      **  *    * *  ** **   *     * ****  * ** * *******         *

consensus_9898#0      TAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAAT 1859
consensus_9898#1      TAAAGGTCAGGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAAT 243
consensus_9898#2      TCAAAACATTTCGCAAGAATTTTCTTCTCCAGCTTGCTCTGATCTCTCTGGTGTTGATAG 210
                      * **        * * *   **    * * *  ***     * * *   *** * ** * 

consensus_9898#0      CTCCA-AGTAA---CAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAG 1915
consensus_9898#1      CTCCA-AGTA----CAGAGATTTTTTTAGGAATAATTAGGAATACTTTTTTACCAAAAAG 298
consensus_9898#2      CTTAGTAGTACAACTAGTAGTATTGTTAGGA-TCGTGACATATTGGATCCTGTCGTCCTG 269
                      **    ****     **   * ** ****** *  * *   **    *  *  *     *

consensus_9898#0      ATTGCAGTTTGTA--TACAGATTTTGGTTCAAAACATTTCGCAAGAA-----------AA 1962
consensus_9898#1      ATTGCAGTTTGTA--TACAGATTTTGGTTCAAAACATTTCGCAAGAATTTTCTTCTCCAA 356
consensus_9898#2      TTTGTGTGTGATGGTTCCCCTTTCTGGGTGCAAATATTATACAGAAATCAATCATCAGAA 329
                       ***    *  *   * *   ** *** *  *** ***   **  **           **

consensus_9898#0      AAAAAA- 1968
consensus_9898#1      AAAAAAA 363
consensus_9898#2      CAAAAAA 336
                       ***** 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)