These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1173 fasta sequence [CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC-TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA] [+] EMBL AK064804 [CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACG ] [+] EMBL CF338834 [ CTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGTCTCCGCCGTGCCGTCCCAGAGTGTTTCCTG ] [+] EMBL OS07202A [ TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTTGGGGGACCTAGTTCGGCACA ] [+] EMBL OSC03971 [ TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGT ] [+] EMBL C98110 [ CAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA] [+] EMBL C98028 [ CCCATTGTC TTGGGGGACCTAGTTCGGCANAATCCAATGTTTGCTGTGAAGCACTTTCNCCCTCNCCCCTGTATAGCCTTGATCANNAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTNCGATTCACTTGCAAAAAA] consensusID : consensus_9900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA] [-] EMBL CA762651 [AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9900#0 CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGC 60 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 GGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTC 120 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 GGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTT 180 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 CCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGG 240 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 CCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTT 300 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 GTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAG 360 consensus_9900#1 ------------------------------------------------------------ consensus_9900#0 AAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAAT 420 consensus_9900#1 ---------------------------------------------------------AAT 3 *** consensus_9900#0 AGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAA 480 consensus_9900#1 AGGCCCCCAAT-GGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAA 62 ** ** **** ** ***** ** * **** **** ****** ** **** * **** consensus_9900#0 TCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATT 540 consensus_9900#1 TAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATT 122 * ************ ******** ****************** ********* ******* consensus_9900#0 GGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGC 600 consensus_9900#1 GGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGC 182 ********* ********************** **** ***** **************** consensus_9900#0 ACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTT 660 consensus_9900#1 GCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTT 242 ******** * *********************************** ************ consensus_9900#0 AAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 720 consensus_9900#1 AAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 302 ********* ************************************************** consensus_9900#0 GTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAG 780 consensus_9900#1 GTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAG 362 ******************************** *************************** consensus_9900#0 GACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCA 840 consensus_9900#1 GACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCA 422 ********************************* *************** ********** consensus_9900#0 CGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 900 consensus_9900#1 CGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 482 ****** ******* ********************************************* consensus_9900#0 CAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGACCTAG 960 consensus_9900#1 CAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGG-TATAA 541 ********** ******************************************* ** consensus_9900#0 TTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGA 1020 consensus_9900#1 TTC--------TTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAA 593 *** * *** * * **** * * * ** * consensus_9900#0 TCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTC 1080 consensus_9900#1 AC-CAAAGCTGTGAAATAATG--TTCTTGATCTGGCAGTG-----AATTGGTAATACCCC 645 * **** **** ** ** * ** * ** ** ** ** * * * * consensus_9900#0 CTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATG 1140 consensus_9900#1 CT-----CCGTTTTTTAAAAAAAAAAAAAAAA---------------------------- 672 ** *** * ** ** ** * consensus_9900#0 AAAATTTTCCAGCTACGATTCACTTGCAAAAAA 1173 consensus_9900#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||