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Oryza sativa
cluster # 9900 cluster # 9900       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9900#0 length = 1173 sequences # 6  
consensus_9900#1 length = 672 sequences # 1  

consensusID : consensus_9900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1173
fasta sequence
                              [CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC-TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA]

[+] EMBL AK064804             [CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACG                ]
[+] EMBL CF338834             [   CTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGTCTCCGCCGTGCCGTCCCAGAGTGTTTCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OS07202A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTTGGGGGACCTAGTTCGGCACA                                                                                                                                                                                                            ]
[+] EMBL OSC03971             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGT                                                                                                                                                                                                                                    ]
[+] EMBL C98110               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA]
[+] EMBL C98028               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCATTGTC TTGGGGGACCTAGTTCGGCANAATCCAATGTTTGCTGTGAAGCACTTTCNCCCTCNCCCCTGTATAGCCTTGATCANNAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTNCGATTCACTTGCAAAAAA]


>consensus_9900#0 CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGC GGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTC GGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTT CCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGG CCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTT GTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAG AAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAAT AGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAA TCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATT GGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGC ACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTT AAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA GTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAG GACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCA CGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC CAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGACCTAG TTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGA TCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTC CTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATG AAAATTTTCCAGCTACGATTCACTTGCAAAAAA



consensusID : consensus_9900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA]

[-] EMBL CA762651             [AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA]


>consensus_9900#1 AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTG AATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATA TTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATG GCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGC TTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATG CAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTC AGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAG CACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGA TCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATA ATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAG CTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAA AAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9900#0      CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGC 60
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      GGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTC 120
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      GGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTT 180
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      CCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGG 240
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      CCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTT 300
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      GTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAG 360
consensus_9900#1      ------------------------------------------------------------
                                                                                  

consensus_9900#0      AAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAAT 420
consensus_9900#1      ---------------------------------------------------------AAT 3
                                                                               ***

consensus_9900#0      AGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAA 480
consensus_9900#1      AGGCCCCCAAT-GGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAA 62
                      ** **  **** ** ***** **  * **** **** ****** **  **** *  ****

consensus_9900#0      TCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATT 540
consensus_9900#1      TAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATT 122
                      * ************ ******** ****************** ********* *******

consensus_9900#0      GGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGC 600
consensus_9900#1      GGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGC 182
                      ********* ********************** **** ***** ****************

consensus_9900#0      ACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTT 660
consensus_9900#1      GCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTT 242
                       ******** * *********************************** ************

consensus_9900#0      AAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 720
consensus_9900#1      AAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 302
                      ********* **************************************************

consensus_9900#0      GTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAG 780
consensus_9900#1      GTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAG 362
                      ******************************** ***************************

consensus_9900#0      GACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCA 840
consensus_9900#1      GACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCA 422
                      ********************************* *************** **********

consensus_9900#0      CGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 900
consensus_9900#1      CGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 482
                      ****** ******* *********************************************

consensus_9900#0      CAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGACCTAG 960
consensus_9900#1      CAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGG-TATAA 541
                      ********** *******************************************   ** 

consensus_9900#0      TTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGA 1020
consensus_9900#1      TTC--------TTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAA 593
                      ***           *   *** *    *    ****      *  *   *      ** *

consensus_9900#0      TCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTC 1080
consensus_9900#1      AC-CAAAGCTGTGAAATAATG--TTCTTGATCTGGCAGTG-----AATTGGTAATACCCC 645
                       * ****   **** **  **      * ** * **  **     ** ** *   * * *

consensus_9900#0      CTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATG 1140
consensus_9900#1      CT-----CCGTTTTTTAAAAAAAAAAAAAAAA---------------------------- 672
                      **     *** *  **       ** **   *                            

consensus_9900#0      AAAATTTTCCAGCTACGATTCACTTGCAAAAAA 1173
consensus_9900#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)