These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTACAAGGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC] [+] EMBL AK068537 [GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTACAAGGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC] consensusID : consensus_9905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence [CCTTNTTCCAGCATGAAAAGGGTTNCAGTCGTTGGAGATTAAACAGGAAGCCAGTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGGTGGTNGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTTAGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA] [+] EMBL AU031243 [CCTTNTTCCAGCATGAAAAGGGTTNCAGTCGTTGGAGATTAAACAGGAAGCCAGTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGGTGGTNGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTTAGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA] [+] EMBL C29134 [ ggTGGAGA TAAACAGGAAG CAGT ACAAGGTGACGGTGCA GGGGTTCGTGGAG CCGCACAAGGTGGT GAAGCGGGTNCAGGCGACGGGGAAGAAGNCGNAGATC TNGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGNCCGTC ] consensusID : consensus_9905#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGGGTGCAGTCGGTGGAGATAAACAGGGAAGCAGTACAA-GTGACGGTGCANGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCANGCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC] [+] EMBL AU031244 [TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGGGTGCAGTCGGTGGAGATAAACAGGGAAGCAGTACAA GTGACGGTGCANGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCANGCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC] [+] EMBL C27244 [ CTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTNCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTNAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTTCGACGGCTGCNAGCTCAAAGTCAGGAACGGCCTNTCCAGCATGAAAGGGGTTCAGTCGGTNGAGAT AACA GGAAGCAGTACAAGGTTACGGT CAAGGGTTCGT GAGCCnac ] consensusID : consensus_9905#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [AGAGATTACAGTACTTGATCTCTTATCTCTTTCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGATTAGTAACTTTCATTAGAGGCAAAGTTGAGAAGCATGGGAGGCACGCTGCACTACCTGTCTGATCTGCTGCTGGGTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTCAACACGGTGGAGCTGAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAGGTCAGGAACACCCTTGCCAACATGAAAGGGGTNCAGTCGGTGGAGATAAACAGGAAGCAGCAGAAGGTGACGGTTCAGGGGATTGTGGNCACGCAGCGGGGTTCTTCGGCGGGCGCAGTCGAC] [+] EMBL OSS15649A [AGAGATTACAGTACTTGATCTCTTATCTCTTTCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGATTAGTAACTTTCATTAGAGGCAAAGTTGAGAAGCATGGGAGGCACGCTGCACTACCTGTCTGATCTGCTGCTGGGTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTCAACACGGTGGAGCTGAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAGGTCAGGAACACCCTTGCCAACATGAAAGGGGTNCAGTCGGTGGAGATAAACAGGAAGCAGCAGAAGGTGACGGTTCAGGGGATTGTGGNCACGCAGCGGGGTTCTTCGGCGGGCGCAGTCGAC] consensusID : consensus_9905#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [GTCGTGACTCCTTCTNGGCTGGCGGCGGGAGAAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACCGNCCTCCTCCAAGCATGAAAAGGTATAAA] [+] EMBL D43436 [GTCGTGACTCCTTCTNGGCTGGCGGCGGGAGAAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACCGNCCTCCTCCAAGCATGAAAAGGTATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9905#3 ------------------------------------------------------------ consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGA 60 consensus_9905#1 ------------------------------------------------------------ consensus_9905#3 ------------------------------------------------------------ consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 CTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATC 120 consensus_9905#1 ------------------------------------------------------------ consensus_9905#3 ------------------------------------------------------------ consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 GATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAA 180 consensus_9905#1 ------------------------------------------------------------ consensus_9905#3 ------------------------------------------------------------ consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 -------------------------TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTG 35 consensus_9905#0 CTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCAT 240 consensus_9905#1 ------------------------------------------------------------ consensus_9905#3 -------------------------------AGAGATTACAGTACTTGATCTCTTATCTC 29 consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 AGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGG 95 consensus_9905#0 GGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAA 300 consensus_9905#1 -------------CCTTNTTCCAGCA-TGAAAAGGGTTNCAGTCGTTGGAGATTAAACAG 46 consensus_9905#3 TT-----TCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGA--TTA 82 consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 TGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCG 155 consensus_9905#0 GAG---GAAGCAGTACAAGGTGACGGTGCAGGGG-TTCGTGGAGCC-GCACAAGG---TG 352 consensus_9905#1 GAA---GCCA-GTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGG---TG 99 consensus_9905#3 GTAACTTTCATTAGAGGCAAAGTTG--AGAAGCATGGGAGGCACGCTGCACTACCTGTCT 140 consensus_9905#4 --------------------------------------------GTCGTGACTCCT-TCT 15 consensus_9905#2 GTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCT 215 consensus_9905#0 GTG-AAGCGGGTGCAGGCGACGGGG----AAGAAGGCGGAGATCT-GGCCCTACGTGCCC 406 consensus_9905#1 GTNGAAGCGGGTGCAGGCGACGGGG----AAGAAGGCGGAGATCTTGGCCCTACGTGCCC 155 * * * * consensus_9905#3 GATCTGCT-GCTGG--GTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTC 197 consensus_9905#4 NGGCTGGC-GGCGG--GAGA-AGCAGCCGTCGGA---GGTACAAGAAGAGGAAGCAGTTC 68 consensus_9905#2 GATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTC 275 consensus_9905#0 TACACCCTCGTCGCCCACCCCTACGCCGCCCCGGC---CTACGACAAGAGG-----GCTC 458 consensus_9905#1 TACACCCTCGTCGCCCACCCCTACGCCGCCCCGGC---CTACGACAAGAGG-----GCTC 207 * * * * ** * **** * * ** consensus_9905#3 AACACGGTGGAGCTGAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAGGTCAGGAA 256 consensus_9905#4 CAGACGGTGGAGCTCAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAAGTCAGGAA 127 consensus_9905#2 CAGACGGTGGAGCTCAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAAGTCAGGAA 334 consensus_9905#0 CCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCG 518 consensus_9905#1 CCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCT-TAGCTCCGCCG 266 *** * * * ** * * * * ** **** ** * consensus_9905#3 C--ACCCTTGCCAA-CATGAAAGGGGTNCAGTCGGTGGAGATAAACA-GGAAGCAGCAGA 312 consensus_9905#4 CCGNCCTCCTCCAAGCATGAAAAGGTATAAA----------------------------- 158 consensus_9905#2 C--GCCCTCTCCAG-CATGAAAGGGGTGCAGTCGGTGGAGATAAACA-GGGAAGCAGTAC 390 consensus_9905#0 CC-GCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAAC 577 consensus_9905#1 CC-GCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAAC 325 * * ** * ** * consensus_9905#3 AGGTGACGGTTCAGGGGA----TTGTGGNCACGCAGCGGGGT--TCTTCGGCGGGCGCAG 366 consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 AAGTGACGGTGCANGGGT----TCGTGGAGCCGCA-CAAGGT--GGTGAAGCGGGTGCAN 443 consensus_9905#0 GCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAG 637 consensus_9905#1 GCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAG 385 consensus_9905#3 TCGAC------------------------------------------------------- 371 consensus_9905#4 ------------------------------------------------------------ consensus_9905#2 GCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC--------------------------- 476 consensus_9905#0 ATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATAT 697 consensus_9905#1 ATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATAT 445 consensus_9905#3 ------------------------------------------------ consensus_9905#4 ------------------------------------------------ consensus_9905#2 ------------------------------------------------ consensus_9905#0 AAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC------------- 732 consensus_9905#1 AAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA 493 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||