cluster # 991

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Oryza sativa
cluster # 991 cluster # 991 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_991#0 length = 782 sequences # 1

consensus_991#1 length = 782 sequences # 1

consensusID : consensus_991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [TAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCCAAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCCATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATCTTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCGGAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCCGCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGCGGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCATTGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGTTTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGTAAATTTGTTTACCACTTCTGGTTCTTCGTCTTGATTTGGTTCTGTTTTTCGCTTTGTACGGCATGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGGTAGACTCGACTAATTAATCGGTCTGCACCTGATGTTGTCAGATAGAGGGACATATAGACGAGTTCATTTCAAAAAAAAAAAAAGGGGGGGCCGGGACCCAATTCGCCTATAGGGAGCGTATTACGCGCCTTCTTGGCGGGGTTTACAACGCGGG]

[+] EMBL CA758496             [TAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCCAAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCCATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATCTTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCGGAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCCGCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGCGGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCATTGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGTTTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGTAAATTTGTTTACCACTTCTGGTTCTTCGTCTTGATTTGGTTCTGTTTTTCGCTTTGTACGGCATGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGGTAGACTCGACTAATTAATCGGTCTGCACCTGATGTTGTCAGATAGAGGGACATATAGACGAGTTCATTTCAAAAAAAAAAAAAGGGGGGGCCGGGACCCAATTCGCCTATAGGGAGCGTATTACGCGCCTTCTTGGCGGGGTTTACAACGCGGG]




>consensus_991#0
TAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCCAAGTCTCGAGCCCCAGCT
AGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCCATCTCAGCAGGCGACATG
GCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATCTTGATGCTTTCTGCCGTG
GCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCGGAGGAGGCGGCCGTTGTC
GCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCCGCGGCGGCCGGCGAGGCT
GCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGCGGCGCGGCGGCGCACGAG
TCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCATTGATCTCTCTCAGTCGTA
GGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGTTTTTTTTTGTATGGTCGT
CGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGTAAATTTGTTTACCACTTC
TGGTTCTTCGTCTTGATTTGGTTCTGTTTTTCGCTTTGTACGGCATGTGTTCTTGTCCAT
GATCAGACCATGTGTAGTGTAGAACTGGTAGACTCGACTAATTAATCGGTCTGCACCTGA
TGTTGTCAGATAGAGGGACATATAGACGAGTTCATTTCAAAAAAAAAAAAAGGGGGGGCC
GGGACCCAATTCGCCTATAGGGAGCGTATTACGCGCCTTCTTGGCGGGGTTTACAACGCG
GG

consensusID : consensus_991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [CCATCATCACCTTCAACCTAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCCAAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCCATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATCTTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCGGAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCCGCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGCGGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCATTGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGTTTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGTTAATTTTGTTTACCACTTCTGTTTCTTCGTCTTGATTTGTTTCTGTTTTTCGCTTTGTACGGCGTGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGTAGAACTCGACTAATTAATCGTTCTGCACTGTATGTTGTCAGATAGATGGACAATATAGACGAGTTCATTTCGATGCATATGCATGCATACCTGTGAAACACCACCGGAAGGGAATAATTAATATAGTGATTTCAC]

[+] EMBL AK108976             [CCATCATCACCTTCAACCTAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCCAAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCCATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATCTTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCGGAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCCGCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGCGGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCATTGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGTTTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGTTAATTTTGTTTACCACTTCTGTTTCTTCGTCTTGATTTGTTTCTGTTTTTCGCTTTGTACGGCGTGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGTAGAACTCGACTAATTAATCGTTCTGCACTGTATGTTGTCAGATAGATGGACAATATAGACGAGTTCATTTCGATGCATATGCATGCATACCTGTGAAACACCACCGGAAGGGAATAATTAATATAGTGATTTCAC]




>consensus_991#1
CCATCATCACCTTCAACCTAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCC
AAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCC
ATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATC
TTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCG
GAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCC
GCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGC
GGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCAT
TGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGT
TTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGT
TAATTTTGTTTACCACTTCTGTTTCTTCGTCTTGATTTGTTTCTGTTTTTCGCTTTGTAC
GGCGTGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGTAGAACTCGACTAA
TTAATCGTTCTGCACTGTATGTTGTCAGATAGATGGACAATATAGACGAGTTCATTTCGA
TGCATATGCATGCATACCTGTGAAACACCACCGGAAGGGAATAATTAATATAGTGATTTC
AC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_991#0      ------------------TAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCC 42
consensus_991#1      CCATCATCACCTTCAACCTAACGATCGACCTGTACGTAGAACTAGCTTTGTCCCAAACCC 60
                                       ******************************************

consensus_991#0      AAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCC 102
consensus_991#1      AAGTCTCGAGCCCCAGCTAGCTAGAATCCATCAGCTTTAATTTCCTCCCAAAAAGAGGCC 120
                     ************************************************************

consensus_991#0      ATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATC 162
consensus_991#1      ATCTCAGCAGGCGACATGGCGGCACGTACGTACCTGGCCGTGTTCGCTTTCTGCGCCATC 180
                     ************************************************************

consensus_991#0      TTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCG 222
consensus_991#1      TTGATGCTTTCTGCCGTGGCGCGCTCGGCCTCGGCCAGGGCTTTGAGAGAACGGGCGCCG 240
                     ************************************************************

consensus_991#0      GAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCC 282
consensus_991#1      GAGGAGGCGGCCGTTGTCGCCGGCCGCGCAGGCGTGGCCGGCATGATGAAGGTGCCCGCC 300
                     ************************************************************

consensus_991#0      GCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGC 342
consensus_991#1      GCGGCGGCCGGCGAGGCTGCAGGGCGGAGGAGCGGCGGCGGCGCGGTCGTCGTCGTCGGC 360
                     ************************************************************

consensus_991#0      GGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCAT 402
consensus_991#1      GGCGCGGCGGCGCACGAGTCCAAGCGGCTTAGCCCCGGAGGGCCGGATCCCCAGCACCAT 420
                     ************************************************************

consensus_991#0      TGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGT 462
consensus_991#1      TGATCTCTCTCAGTCGTAGGTAGTCGTCGCCTCGTCTGCATCAACACAAATTAAGGAGGT 480
                     ************************************************************

consensus_991#0      TTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGT 522
consensus_991#1      TTTTTTTTGTATGGTCGTCGATCGCCCAGTGCTGCATGTTTCAGTGTTCGATCTTGCGGT 540
                     ************************************************************

consensus_991#0      AAATTT-GTTTACCACTTCTGGTTCTTCGTCTTGATTTGGTTCTGTTTTTCGCTTTGTAC 581
consensus_991#1      TAATTTTGTTTACCACTTCTGTTTCTTCGTCTTGATTTGTTTCTGTTTTTCGCTTTGTAC 600
                      ***** ************** ***************** ********************

consensus_991#0      GGCATGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGGTAGACTCGACTAA 641
consensus_991#1      GGCGTGTGTTCTTGTCCATGATCAGACCATGTGTAGTGTAGAACTGTAGAACTCGACTAA 660
                     *** ******************************************    **********

consensus_991#0      TTAATCGGTCTGCACCTGATGTTGTCAGATAGAGGGACA-TATAGACGAGTTCATTTCAA 700
consensus_991#1      TTAATCGTTCTGCACTGTATGTTGTCAGATAGATGGACAATATAGACGAGTTCATTTCGA 720
                     ******* *******   *************** ***** ****************** *

consensus_991#0      AAAAAAAAAAAGGGGGGGCCGGGACCCAATTCGCCTATAGGGAGCGTATTACGCGCCTTC 760
consensus_991#1      TGCATATGCATGCATAC-CTGTGAAACA--CCACCGGAAGGGAATAATTAATATAGTGAT 777
                        * *   * *      * * **  **   * **   *****     * *         

consensus_991#0      TTGGCGGGGTTTACAACGCGGG 782
consensus_991#1      TTCAC----------------- 782
                     **  *