These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 988 fasta sequence [CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA] [+] EMBL CB636086 [CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGA ] [+] EMBL CB657962 [ tctttttTTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAGAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTAC TGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA] consensusID : consensus_9911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 422 fasta sequence [TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA] [+] EMBL AK105379 [TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGAT ] [+] EMBL CF339955 [ GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA] [+] EMBL CF339847 [ GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA] [+] EMBL CF339626 [ CTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA] [+] EMBL CF339251 [ GCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACTCAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGNCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATACTTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9911#0 CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTT 60 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 TTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTC 120 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 AAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGA 180 consensus_9911#1 ------------------------------------------------TACCAAAGGCGG 12 * *** * consensus_9911#0 GCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCC 240 consensus_9911#1 CTGCTGCTTCGCTATCCTCCTGCAGC-----TCGCC-CAGCAGGCAGCAGGTCGCCGTC- 65 * * * ** * * ** * * * ** * * ** consensus_9911#0 CCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAG 300 consensus_9911#1 -CTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGT 124 **** * ** * ** *** ** ** * * * ** * * ** * consensus_9911#0 CAG-GCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAA 359 consensus_9911#1 TGGAGTGGCCAGCGGCGGCGCTCCACGGC------GCGACGACGACACAAGCCGCGTGGG 178 * * ** * ** **** ** * ** * * * ** * consensus_9911#0 CCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACG 419 consensus_9911#1 CCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACG 238 ** * *** ** ********************* * ******** ******** consensus_9911#0 ACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCT 479 consensus_9911#1 ACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCT 298 ******* ********************************* ********* ******* consensus_9911#0 CCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGC 539 consensus_9911#1 CCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGC 358 ************************* ********** ************** ***** ** consensus_9911#0 ATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCG 599 consensus_9911#1 ATCCTTGC--------GTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCG 410 ****** * ******** **** ******************* ********** consensus_9911#0 ATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAAT 659 consensus_9911#1 ATGCTTATCTAA------------------------------------------------ 422 ***** ***** consensus_9911#0 TTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGA 719 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 AATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATT 779 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 ATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAA 839 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 ATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAA 899 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 TTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAA 959 consensus_9911#1 ------------------------------------------------------------ consensus_9911#0 AACCAATCGTGTGAAAGTACTTTAATTAA 988 consensus_9911#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||