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Oryza sativa
cluster # 9911 cluster # 9911       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9911#0 length = 988 sequences # 2  
consensus_9911#1 length = 422 sequences # 5  

consensusID : consensus_9911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 988
fasta sequence
                              [CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA]

[+] EMBL CB636086             [CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGA                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB657962             [                                                                                                                                                                                           tctttttTTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAGAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTAC  TGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA]


>consensus_9911#0 CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTT TTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTC AAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGA GCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCC CCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAG CAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAAC CGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGA CGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTC CATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCA TCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGA TGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATT TTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAA ATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTA TCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAA TTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAAT TTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAA ACCAATCGTGTGAAAGTACTTTAATTAA



consensusID : consensus_9911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 422
fasta sequence
                              [TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]

[+] EMBL AK105379             [TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGAT          ]
[+] EMBL CF339955             [          GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339847             [          GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339626             [                  CTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339251             [                      GCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACTCAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGNCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATACTTGC                                                        ]


>consensus_9911#1 TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCG CCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGT TGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCC TCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGAC GACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCC ATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCAT CCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCT AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9911#0      CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTT 60
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      TTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTC 120
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      AAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGA 180
consensus_9911#1      ------------------------------------------------TACCAAAGGCGG 12
                                                                      *   ***   * 

consensus_9911#0      GCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCC 240
consensus_9911#1      CTGCTGCTTCGCTATCCTCCTGCAGC-----TCGCC-CAGCAGGCAGCAGGTCGCCGTC- 65
                         * * *     **        * *     **     *  *  *  **  *  *  ** 

consensus_9911#0      CCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAG 300
consensus_9911#1      -CTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGT 124
                       ****  *  **   * **  *** ** ** *   *   * **   * * **  *     

consensus_9911#0      CAG-GCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAA 359
consensus_9911#1      TGGAGTGGCCAGCGGCGGCGCTCCACGGC------GCGACGACGACACAAGCCGCGTGGG 178
                        * *  **  *  **    ****   **       *  ** *  *    *  **  *  

consensus_9911#0      CCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACG 419
consensus_9911#1      CCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACG 238
                      **    * *** **     ********************* * ******** ********

consensus_9911#0      ACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCT 479
consensus_9911#1      ACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCT 298
                      ******* *********************************  ********* *******

consensus_9911#0      CCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGC 539
consensus_9911#1      CCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGC 358
                      ************************* ********** ************** ***** **

consensus_9911#0      ATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCG 599
consensus_9911#1      ATCCTTGC--------GTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCG 410
                      ****** *        ******** **** ******************* **********

consensus_9911#0      ATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAAT 659
consensus_9911#1      ATGCTTATCTAA------------------------------------------------ 422
                      ***** *****                                                 

consensus_9911#0      TTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGA 719
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      AATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATT 779
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      ATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAA 839
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      ATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAA 899
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      TTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAA 959
consensus_9911#1      ------------------------------------------------------------
                                                                                  

consensus_9911#0      AACCAATCGTGTGAAAGTACTTTAATTAA 988
consensus_9911#1      -----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)