cluster # 9916

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Oryza sativa
cluster # 9916 cluster # 9916 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9916#0 length = 790 sequences # 6

consensus_9916#1 length = 541 sequences # 1

consensusID : consensus_9916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 790
fasta sequence

                              [TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT-AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCA]

[+] EMBL AK062709             [TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCA         AGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTT                                                          ]
[+] EMBL AK062530             [                             AACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCA]
[+] EMBL OS1321680            [                                     CCCCGAGGAAATGGAAGGCGGCGGA NAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGA CACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA755374             [                                                                          GCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCANAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGAacg                                                                                                            ]
[+] EMBL OSS15826A            [                                                                                 CGCACCCGGCGATGNNGNCGCTGGCNTTCCTGCTGGGNCNGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGNGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCNGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTNTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTttt                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU174360             [                                                                                                                                                                                                                                                                                            CGGCCCCGCCCCGACGGCTCCGTNGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTNTACAGCCACATCTCAAAGCCCTTNTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAAaaaa                                                                           ]




>consensus_9916#0
TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCG
GAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGA
AGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGG
AGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGA
AGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACG
GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGT
TTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG
TGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGA
TGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAA
CGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTA
TGTTAAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCT
ACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGC
GAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAA
TTTACCATCA

consensusID : consensus_9916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAATAAGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCAGTATT]

[+] EMBL CB097053             [GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAATAAGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCAGTATT]




>consensus_9916#1
GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGG
CTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTT
TGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGT
GAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGAT
GGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAAC
GATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTAT
GTTAAAATAAGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATA
ATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGCGAGTTCGGGCTTGT
TCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCAGTAT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9916#0      TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCG 60
consensus_9916#1      ------------------------------------------------------------
                                                                                  

consensus_9916#0      GAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGA 120
consensus_9916#1      ------------------------------------------------------------
                                                                                  

consensus_9916#0      AGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGG 180
consensus_9916#1      ------------------------------------------------------------
                                                                                  

consensus_9916#0      AGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGA 240
consensus_9916#1      ------------------------------------------------------------
                                                                                  

consensus_9916#0      AGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACG 300
consensus_9916#1      -GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACG 59
                       ** ********************************************************

consensus_9916#0      GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGT 360
consensus_9916#1      GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGT 119
                      ************************************************************

consensus_9916#0      TTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG 420
consensus_9916#1      TTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG 179
                      ************************************************************

consensus_9916#0      TGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGA 480
consensus_9916#1      TGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGA 239
                      ****************** *****************************************

consensus_9916#0      TGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAA 540
consensus_9916#1      TGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAA 299
                      ************************************************************

consensus_9916#0      CGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTA 600
consensus_9916#1      CGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTA 359
                      ************************************************************

consensus_9916#0      TGTTAAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCT 660
consensus_9916#1      TGTTAAAATAA-------------GCCTATTATATCTGGGAATTGGGGCAACCTGCCCCT 406
                      ***********             ************************************

consensus_9916#0      ACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGC 720
consensus_9916#1      ACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGC 466
                      ************************************************ ***********

consensus_9916#0      GAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAA 780
consensus_9916#1      GAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAA 526
                      ************************** *********************************

consensus_9916#0      TTTACCATCA----- 790
consensus_9916#1      TTTACCATCAGTATT 541
                      **********