These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2452 fasta sequence [TCCATTCAAGACCAGTGCTCGCTGCGAGTCCCGACGCGGCGGCGGCGGCGGAGCCGCTCTCCTCACCCGCTCGCAATCGCTGCTCCGTTCGCCGCCTCACATCCATGGATTCCACCCCGGCTCCTGCCGCCGCCGCCGCGGAGACGCCGACCACCGCCCCGGCGTTCGAGGAATGCCTCCGCCTCCTCCGCGGGGAGCGCGACGAGCAGAAGCTGGCGGGCCTCCTCGTCGCCGCCAACCTCTGCCGCGCCGGCGACGCCGCCTCCGTCGTCGAGGTGTACCGCGCCGTCGGGCCCCGGTTCCTCCGCCGCCTCCTCAACACCGGGCTGGGGAAAGTGGAGGGCGGCAAGGAGGAGGACAGGGAGGCGTACCTGCGTCTCTCGGTGACGGTGCTTTCCGGGCTTGCTCGATTCCCAGAGGTTGCCGCCGACGAGGGGGTCGTCTCCACTGTGCCCCTCATCGCCGAGATCGTCTCCAAATCGTCTGATCTGGCAATTACTGAAGAATGTTTTGAGCTCCTGTCTCTTATTGCAATAGCTTCAGATGGTGGGGCGCATACGTTTTGTGAACCTGGAGTGATGGATATGCTCTTCCTCCAAATCTCAAACTTCCCAGATGGTTCAAGGTGCTTAGAGCTTGCCATTCATCTAATGCAGCTACTTGTTCATAAAATCAGAATAGACAACATGACCGTGGAGAAACTGCAAGGCATGACAAGCATGGTGACCTCACTTGCTAGGCTTTTTGCTGTTCTTCATACTACAGTTAAATTTGAAGCGCTGCATATGCTTACCGCCCTTCTATCCCAAAAGGAATCTCCGCTTCATGACGCTTTGAGATCAGTACCTTCCATGATTTGGAAATGTCAAATTCGAGTTGGGATAACGGCCGTTCTCCAAAACCGTGTTGTATCTTCTGAAAAGTTGCAAGCTCTTCTTTTGGCGGAGTGCATGATGTCTATACTTGGTGAGAATTGGCTGTCAGAAGAATACAAAGTCCCTGATGACCAGAATATGATGCCTGTTGATAAATTTGTATTGCTTGTCCTAGAATCTGCAAGAATCGAAGTTTCTGTCCTTCTAAATGAGCTTGCTTATTTGAAGTATGAATCTTCAAAAAATTCCCAGAGAGATGATGCCATCAGTCAGAAAGAGAGAAACCTGGCTATATTATTTTCACTAATAGAAAGAATAATAAAAATGATATCAAATGCCAGTAGTGGGGAAGGTGCTGTATGTCAGACCATCCGTGAGAGCACCATCATGAAAGCAATTACAGGATTAAATGAGACAGTTGGCTTAGTTTTAGACTTTCTGCAGGACGCAAAGGATCATGGGCAAAGGAAAGGCGATGATCTTTTGGCGGCTGTGAGAATAGTAGGAAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAATTTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGCTCATTCCATTCTATTTGTTTTATGCTTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTTATAGACTGCCTTATTAAAATGATCGAACAGAATGGAATGATGATTGACACTGGTAACATGTTTTTAGCATGTGATACCATCATAAACTTTTTGTCAAATATGAAAAATGCTCATATTCAAATGGGGTCTTGTTTTGTCGGCCTTCTAAAAGCACTTGTTTCATGGACTGGAACCGCCGATGATTCATCAGTTATCATAACAGCCTCCTGCTTATGCACGTTGGTGTTGGACTTAACAACAGAGGAGTTTTTATTGAGCAGCTCTGATTTTGATTCCAAGACACTTGAGAAGTTGTCAAAGCTCATTGCCAGAAGTTTGCATCAGGGCATTCCTGACGACGACATAGAACAATCCAACCAAAAGCAAATCATACTATCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATATTGGAAGGAGTAGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGCACTTAATATGCAACTAATAGTTGATGAGTATTTGTGCATTT] [+] EMBL AK101070 [TCCATTCAAGACCAGTGCTCGCTGCGAGTCCCGACGCGGCGGCGGCGGCGGAGCCGCTCTCCTCACCCGCTCGCAATCGCTGCTCCGTTCGCCGCCTCACATCCATGGATTCCACCCCGGCTCCTGCCGCCGCCGCCGCGGAGACGCCGACCACCGCCCCGGCGTTCGAGGAATGCCTCCGCCTCCTCCGCGGGGAGCGCGACGAGCAGAAGCTGGCGGGCCTCCTCGTCGCCGCCAACCTCTGCCGCGCCGGCGACGCCGCCTCCGTCGTCGAGGTGTACCGCGCCGTCGGGCCCCGGTTCCTCCGCCGCCTCCTCAACACCGGGCTGGGGAAAGTGGAGGGCGGCAAGGAGGAGGACAGGGAGGCGTACCTGCGTCTCTCGGTGACGGTGCTTTCCGGGCTTGCTCGATTCCCAGAGGTTGCCGCCGACGAGGGGGTCGTCTCCACTGTGCCCCTCATCGCCGAGATCGTCTCCAAATCGTCTGATCTGGCAATTACTGAAGAATGTTTTGAGCTCCTGTCTCTTATTGCAATAGCTTCAGATGGTGGGGCGCATACGTTTTGTGAACCTGGAGTGATGGATATGCTCTTCCTCCAAATCTCAAACTTCCCAGATGGTTCAAGGTGCTTAGAGCTTGCCATTCATCTAATGCAGCTACTTGTTCATAAAATCAGAATAGACAACATGACCGTGGAGAAACTGCAAGGCATGACAAGCATGGTGACCTCACTTGCTAGGCTTTTTGCTGTTCTTCATACTACAGTTAAATTTGAAGCGCTGCATATGCTTACCGCCCTTCTATCCCAAAAGGAATCTCCGCTTCATGACGCTTTGAGATCAGTACCTTCCATGATTTGGAAATGTCAAATTCGAGTTGGGATAACGGCCGTTCTCCAAAACCGTGTTGTATCTTCTGAAAAGTTGCAAGCTCTTCTTTTGGCGGAGTGCATGATGTCTATACTTGGTGAGAATTGGCTGTCAGAAGAATACAAAGTCCCTGATGACCAGAATATGATGCCTGTTGATAAATTTGTATTGCTTGTCCTAGAATCTGCAAGAATCGAAGTTTCTGTCCTTCTAAATGAGCTTGCTTATTTGAAGTATGAATCTTCAAAAAATTCCCAGAGAGATGATGCCATCAGTCAGAAAGAGAGAAACCTGGCTATATTATTTTCACTAATAGAAAGAATAATAAAAATGATATCAAATGCCAGTAGTGGGGAAGGTGCTGTATGTCAGACCATCCGTGAGAGCACCATCATGAAAGCAATTACAGGATTAAATGAGACAGTTGGCTTAGTTTTAGACTTTCTGCAGGACGCAAAGGATCATGGGCAAAGGAAAGGCGATGATCTTTTGGCGGCTGTGAGAATAGTAGGAAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAATTTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGCTCATTCCATTCTATTTGTTTTATGCTTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTTATAGACTGCCTTATTAAAATGATCGAACAGAATGGAATGATGATTGACACTGGTAACATGTTTTTAGCATGTGATACCATCATAAACTTTTTGTCAAATATGAAAAATGCTCATATTCAAATGGGGTCTTGTTTTGTCGGCCTTCTAAAAGCACTTGTTTCATGGACTGGAACCGCCGATGATTCATCAGTTATCATAACAGCCTCCTGCTTATGCACGTTGGTGTTGGACTTAACAACAGAGGAGTTTTTATTGAGCAGCTCTGATTTTGATTCCAAGACACTTGAGAAGTTGTCAAAGCTCATTGCCAGAAGTTTGCATCAGGGCATTCCTGACGACGACATAGAACAATCCAACCAAAAGCAAATCATACTATCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATATTGGAAGGAGTAGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGCACTTAATATGCAACTAATAGTTGATGAGTATTTGTGCATTT] [+] EMBL AK103079 [TCCATTCAAGACCAGTGCTCGCTGCGAGTCCCGACGCGGCAGCGGCGGCGGAGCCGCTCTCCTCACCCGCTCGCAATCGCTGCTCCGTTCGCCGCCTCACATCCATGGATTCCACCCCGGCTCCTGCCGCCGCCGCCGCGGAGACGCCGACCACCGCCCCGGCGTTCGAGGAATGCCTCCGCCTCCTCCGCGGGGAGCGCGACGAGCAGAAGCTGGCGGGCCTCCTCGTCGCCGCCAACCTCTGCCGCGCCGGCGACGCCGCCTCCGTCGTCGAGGTGTACCGCGCCGTCGGGCCCCGGTTCCTCCGCCGCCTCCTCAACACCGGGCTGGGGAAAGTGGAGGGCGGCAAGGAGGAGGACAGGGAGGCGTACCTGCGTCTCTCGGTGACGGTGCTTTCCGGGCTTGCTCGATTCCCAGAGGTTGCCGCCGACGAGGGGGTCGTCTCCACTGTGCCCCTCATCGCCGAGATCGTCTCCAAATCGTCTGATCTGGCAATTACTGAAGAATGTTTTGAGCTCCTGTCTCTTATTGCAATAGCTTCAGATGGTGGGGCGCATACGTTTTGTGAACCTGGAGTGATGGATATGCTCTTCCTCCAAATCTCAAACTTCCCAGATGGTTCAAGGTGCTTAGAGCTTGCCATTCATCTAATGCAGCTACTTGTTCATAAAATCAGAATAGACAACATGACCGTGGAGAAACTGCAAGGCATGACAAGCATGGTGACCTCACTTGCTAGGCTTTTTGCTGTTCTTCATACTACAGTTAAATTTGAAGCGCTGCATATGCTTACCGCCCTTCTATCCCAAAAGGAATCTCCGCTTCATGACGCTTTGAGATCAGTACCTTCCATGATTTGGAAATGTCAAATTCGAGTTGGGATAACGGCCGTTCTCCAAAACCGTGTTGTATCTTCTGAAAAGTTGCAAGCTCTTCTTTTGGCGGAGTGCATGATGTCTATACTTGGTGAGAATTGGCTGTCAGAAGAATACAAAGTCCCTGATGACCAGAATATGATGCCTGTTGATAAATTTGTATTGCTTGTCCTAGAATCTGCAAGAATCGAAGTTTCTGTCCTTCTAAATGAGCTTGCTTATTTGAAGTATGAATCTTCAAAAAATTCCCAGAGAGATGATGCCATCAGTCAGAAAGAGAGAAACCTGGCTATATTATTTTCACTAATAGAAAGAATAATAAAAATGATATCAAATGCCAGTAGTGGGGAAGGTGCTGTATGTCAGACCATCCGTGAGAGCACCATCATGAAAGCAATTACAGGATTAAATGAGACAGTTGGCTTAGTTTTAGACTTTCTGCAGGACGCAAAGGATCATGGGCAAAGGAAAGGCGATGATCTTTTGGCGGCTGTGAGAATAGTAGGAAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAATTTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGCTCATTCCATTCTATTTGTTTTATGCTTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTTATAGACTGCCTTATTAAAATGATCGAACAGAATGGAATGATGATTGACACTGGTAACATGTTTTTAGCATGTGATACCATCATAAACTTTTTGTCAAATATGAAAAATGCTCATATTCAAATGGGGTCTTGTTTTGTCGGCCTTCTAAAAGCACTTGTTTCATGGACTGGAACCGCCGATGATTCATCAGTTATCATAACAGCCTCCTGCTTATGCACGTTGGTGTTGGACTTAACAACAGAAGAGTTTTTATTGAGCAGCTCTGATTTTGATTCCAAGACACTTGAGAAGTTGTCAAAGCTCATTGCCAGAAGTTTGCATCAGGGCATTCCTGACGACGACATAGAACAATCCAACCAAAAGCAAATCATACTATCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATATTGGAAGGAGTAGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAAT ] consensusID : consensus_9919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [AGTATTATCTA-CTTTCATTATTTGCCGTACTGGTTTGCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGTGGGTCCTTTCGATTCACAAACTAGCCATTCTCGCACATTATTTGCATGTGAGATGCTGCTGATGTGCCCTTATTTGTTTAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGAACTTAATATGCAACTAATAGTTGATGAGTATTTGTGCATTTTCGAAAGATTAAGACGGTGTGAAGTGTTCTGAACTGTTTATGCAGCAAAGCAATAAACTACGTATGTTGCCTTTTTGAGTCGTGCAGAGATGGAGACAGCTCCCTGATACTTTGCGGAAGGAGGCATTTTGCAGATTATTACAGCGAGCCTTGTGAAAGCAGCGTTTGTATTTTGCCTAAACACAATCCCTAATCTTGTATTTTGCAGATTATT] [-] EMBL CB635494 [AGTATTATCTA CTTTCATTATTTGCCGTACTGGTTTGCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGTGGGTCCTTTCGATTCACAAACTAGCCATTCTCGCACATTATTTGCATGTGAGATGCTGCTGATGTGCCCTTATTTGTTTAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGAACTTAATATGCAACTAATAGTTGATGAGTATTTGTGCATTTTCGAAAGATTAAGACGGTGTGAAGTGTTCTGAACTGTTTATGCAGCAAAGCAATAAACTACGTATGTTGCCTTTTTGAGTCGTGCAGAGATGGAGACAGCTCCCTGATACTTTGCGGAAGGAGGCATTTTGCAGATTATTACAGCGAGCCTTGTGAAAGCAGCGTTTGTATTTTGCCTAAACACAATCCCTAATCTTGTATTTTGCAGATTATT] [-] EMBL CB635895 [ GTATTATCTANCTTTCATTATTTGCCGTACTGGTTTGCAGGTTACAGGAGGTGGTCTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATGTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGTGGGTCCTTTCGATTCACAAACTAGCCATTCTCGCACATTATTTGCATGTGAGATGCTGCTGATGTGCCCTTATTTGTTTAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCACCATGATGCGAAGGGAAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGAACTTAATATGCAACTAATAGTTGATGAGTATTTGTGCATTTTCGAAAGATTAAGACGGTGTGAAGTGTTCTGAACTGTTTATGCAGCAAAGCAATAAACTACGTATGTTGCCTTTTTGAGTCGTGCAGAGATGGAGACAGCTCCCTGATACTTTGCGGAAGGAGGCATTTTGCAGATTATTACAGCGAGCCTTGTGAAAGCAGCGTTTGTATTTTGCCTAAACACAATCCCTAATCTTGTATTTTGCAGATTATT] consensusID : consensus_9919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [TCTTTATTTTTAACAATTGAACATGGTTAGTATTATAATGGCCCTTAGCTTCCACTTTTGATGATTTTACTTACTTTACATGACAGCTAATTGAATTTTGACACCGTGAAATAAATTCATTCGCAATTTGGCCACTCCATATGCTTTTATGCACATCTTGTACATATGCTGTTAACCCCAAATGGATCTTTAATAGTGAAATTTCAAGAACAAACTCCTGTAGAATATTCGTTTTCCTTAATTTGAAAATATCTATTGCAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAATTTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGGTAGCTTGTCCTCTATTTTGTGCTCATGTGTAGAGATCTTTCCGTAATGTGACAATGTTGATATAAAGTTCTATTCTTGTGTACAGCTCATTCCATTCTATTTGTTTTATGCTTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTAAGTAAGCTTATTTTGCATTACACTTCAGAAAGGTTCTAAATGTAGAATTCCATGGCATAAATACTTTAGCTGCCTGTAGGTTCCAATCAGTTTTGACATAGGTTTACTTTTGAAATGAATCCATGGTATTGCTTAATCTTGTCAACTACTAGAAGAGATTTTGCGGTAGTATACAAGCCTATTTTTCCCCTTAGTTATGGACTGAT] [+] EMBL CB635896 [TCTTTATTTTTAACAATTGAACATGGTTAGTATTATAATGGCCCTTAGCTTCCACTTTTGATGATTTTACTTACTTTACATGACAGCTAATTGAATTTTGACACCGTGAAATAAATTCATTCGCAATTTGGCCACTCCATATGCTTTTATGCACATCTTGTACATATGCTGTTAACCCCAAATGGATCTTTAATAGTGAAATTTCAAGAACAAACTCCTGTAGAATATTCGTTTTCCTTAATTTGAAAATATCTATTGCAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAATTTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGGTAGCTTGTCCTCTATTTTGTGCTCATGTGTAGAGATCTTTCCGTAATGTGACAATGTTGATATAAAGTTCTATTCTTGTGTACAGCTCATTCCATTCTATTTGTTTTATGCTTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTAAGTAAGCTTATTTTGCATTACACTTCAGAAAGGTTCTAAATGTAGAATTCCATGGCATAAATACTTTAGCTGCCTGTAGGTTCCAATCAGTTTTGACATAGGTTTACTTTTGAAATGAATCCATGGTATTGCTTAATCTTGTCAACTACTAGAAGAGATTTTGCGGTAGTATACAAGCCTATTTTTCCCCTTAGTTATGGACTGAT] consensusID : consensus_9919#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [AGGGCGAGACAAGGGGGAACAATCCAACCAAAAGCAAATCATACTATCAGGTTACAGGAGGTGGTTTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCCCCATGATGCGAAGGGAAAATGTACATATTCCCCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAAAAAAAAAAAAAAAA] [-] EMBL CA761729 [AGGGCGAGACAAGGGGGAACAATCCAACCAAAAGCAAATCATACTATCAGGTTACAGGAGGTGGTTTGATAGATATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGATTGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAGTATACCCGTGCCTGATATTCTTCAATCTTAAGGGGTTTGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCCATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTGTCGCGTTGCTTGGCAGTGCCCCATGATGCGAAGGGAAAATGTACATATTCCCCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAAAAAAAAAAAAAAAA] consensusID : consensus_9919#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [AAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF321005 [AAAATGTACATATTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTTAATGTAGTGCAAATAACTCGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCCATTCAAGACCAGTGCTCGCTGCGAGTCCCGACGCGGCGGCGGCGGCGGAGCCGCTCT 60 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CCTCACCCGCTCGCAATCGCTGCTCCGTTCGCCGCCTCACATCCATGGATTCCACCCCGG 120 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CTCCTGCCGCCGCCGCCGCGGAGACGCCGACCACCGCCCCGGCGTTCGAGGAATGCCTCC 180 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 GCCTCCTCCGCGGGGAGCGCGACGAGCAGAAGCTGGCGGGCCTCCTCGTCGCCGCCAACC 240 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCTGCCGCGCCGGCGACGCCGCCTCCGTCGTCGAGGTGTACCGCGCCGTCGGGCCCCGGT 300 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCCTCCGCCGCCTCCTCAACACCGGGCTGGGGAAAGTGGAGGGCGGCAAGGAGGAGGACA 360 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 GGGAGGCGTACCTGCGTCTCTCGGTGACGGTGCTTTCCGGGCTTGCTCGATTCCCAGAGG 420 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TTGCCGCCGACGAGGGGGTCGTCTCCACTGTGCCCCTCATCGCCGAGATCGTCTCCAAAT 480 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CGTCTGATCTGGCAATTACTGAAGAATGTTTTGAGCTCCTGTCTCTTATTGCAATAGCTT 540 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CAGATGGTGGGGCGCATACGTTTTGTGAACCTGGAGTGATGGATATGCTCTTCCTCCAAA 600 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCTCAAACTTCCCAGATGGTTCAAGGTGCTTAGAGCTTGCCATTCATCTAATGCAGCTAC 660 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TTGTTCATAAAATCAGAATAGACAACATGACCGTGGAGAAACTGCAAGGCATGACAAGCA 720 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TGGTGACCTCACTTGCTAGGCTTTTTGCTGTTCTTCATACTACAGTTAAATTTGAAGCGC 780 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TGCATATGCTTACCGCCCTTCTATCCCAAAAGGAATCTCCGCTTCATGACGCTTTGAGAT 840 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CAGTACCTTCCATGATTTGGAAATGTCAAATTCGAGTTGGGATAACGGCCGTTCTCCAAA 900 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 ACCGTGTTGTATCTTCTGAAAAGTTGCAAGCTCTTCTTTTGGCGGAGTGCATGATGTCTA 960 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TACTTGGTGAGAATTGGCTGTCAGAAGAATACAAAGTCCCTGATGACCAGAATATGATGC 1020 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 CTGTTGATAAATTTGTATTGCTTGTCCTAGAATCTGCAAGAATCGAAGTTTCTGTCCTTC 1080 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TAAATGAGCTTGCTTATTTGAAGTATGAATCTTCAAAAAATTCCCAGAGAGATGATGCCA 1140 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCAGTCAGAAAGAGAGAAACCTGGCTATATTATTTTCACTAATAGAAAGAATAATAAAAA 1200 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TGATATCAAATGCCAGTAGTGGGGAAGGTGCTGTATGTCAGACCATCCGTGAGAGCACCA 1260 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TCATGAAAGCAATTACAGGATTAAATGAGACAGTTGGCTTAGTTTTAGACTTTCTGCAGG 1320 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 ACGCAAAGGATCATGGGCAAAGGAAAGGCGATGATCTTTTGGCGGCTGTGAGAATAGTAG 1380 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 GAAGTTATCTGGCAGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGCTGGAAT 1440 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TTATCTTCTCTGTTGAAGGGCAAGATGAATCAAGCTCATTCCATTCTATTTGTTTTATGC 1500 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TTCCCATGCTATCACAAATAACAATGGAGGCTGATGGATGTAGAATTTTGGCATCATTTG 1560 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 GAGGCTATAAAATGGTTATAGACTGCCTTATTAAAATGATCGAACAGAATGGAATGATGA 1620 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TTGACACTGGTAACATGTTTTTAGCATGTGATACCATCATAAACTTTTTGTCAAATATGA 1680 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 AAAATGCTCATATTCAAATGGGGTCTTGTTTTGTCGGCCTTCTAAAAGCACTTGTTTCAT 1740 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 GGACTGGAACCGCCGATGATTCATCAGTTATCATAACAGCCTCCTGCTTATGCACGTTGG 1800 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ----------------------------------------------TCTTTATTTTTAAC 14 consensus_9919#1 ------------------------------------------------------------ consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TGTTGGACTTAACAACAGAGGAGTTTTTATTGAGCAGCTCTGATTTTGATTCCAAGACAC 1860 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 AATTGAACATGGTTAGTATTATAATGGCCCTTAGCTTCCACTTTTGATGATTTTACTTAC 74 consensus_9919#1 --------------------------------------------------------AGTA 4 consensus_9919#3 ----------------------------------------------AGGGCGAGACAAGG 14 consensus_9919#0 TTGAGAAGTTGTCAAAGCTCATTGCCAGAAGTTTGCATCAGGGCATTCCTGACGACGACA 1920 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TTTACATGACAGCTAATTGAATTTTGACACCGTGAAATAAATTCATTCGCAATTTGGCCA 134 consensus_9919#1 TTATCTACTTTCATTATTTGCCGTACTGGT-TTGCAGGTTACAGGAGGTGGTCTGATAGA 63 consensus_9919#3 GGGAACAATCCAACCAAAAGCAAATCATAC-TATCAGGTTACAGGAGGTGGTTTGATAGA 73 consensus_9919#0 TAGAACAATCCAACCAAAAGCAAATCATAC-TATCAGGTTACAGGAGGTGGTCTGATAGA 1979 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 CTCCATA-TGCTTTTATGCACATCTTGTACATATGCTGTTAACCCCAAATGGATCTTTAA 193 consensus_9919#1 TATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGAT 123 consensus_9919#3 TATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGAT 133 consensus_9919#0 TATCCACGTGTTAAAAACATCCTGCAGCAGCATGTTTCTGTGTGATTTTCTGCTTATGAT 2039 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TAGTGAAATTTCAAGAACAAACTCCTGTAGAATATTCGTTTTCCTTAATTTGAAAATATC 253 consensus_9919#1 TGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAG 183 consensus_9919#3 TGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAG 193 consensus_9919#0 TGCCGTCAATCTCTTGTCAAAAGAGAACCCACCCCCCCAGATACAAACCTTAAGTTAAAG 2099 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TATTGCAGTTATCTGGC--AGAGGCACCATATGCCTGCAAGGAGAAGATTAGACATCTGC 311 consensus_9919#1 TATACCCGTGCCTGATATTCTTCAATCTTAAGGTGGGTCCTTTCGATTCACAAACTAGCC 243 consensus_9919#3 TATACCCGTGCCTGATATTCTTCAATCTTAAGG--------------------------- 226 consensus_9919#0 TATACCCGTGCCTGATATTCTTCAATCTTAAGG--------------------------- 2132 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TGGAATTTATCTT--CTCTGTTGAAGGGCAAGATGAATCAAGGTAGCTTGTCCTCTATTT 369 consensus_9919#1 ATTCTCGCACATTATTTGCATGTGAGATGCTGCTGATGTGCCCTTATTTGTTTAGGGGTT 303 consensus_9919#3 --------------------------------------------------------GGTT 230 consensus_9919#0 --------------------------------------------------------GGTT 2136 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TGTGCTCATGTGTAGAGATCTTTCCGTAATGTGACAATGTTGATATAAAGTTCTATTCTT 429 consensus_9919#1 TGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCC 363 consensus_9919#3 TGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCC 290 consensus_9919#0 TGCCAAATGCCAATGCATTCTTTGTGGGTGCAAGCAATTATAGGTTACGGTAGTTCCTCC 2196 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 GTGTACAGCTCATTCCATTCTATTTG--TTTTATGCTTCCCATGCTATCACAAATAACAA 487 consensus_9919#1 ATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTG 423 consensus_9919#3 ATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTG 350 consensus_9919#0 ATGTAACAGCTAGATAGTACTACACCTAAACGGATGAGCAAGATGCCATTGTATACAGTG 2256 consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 TGGAGGCTGATGGATGTAGAATTTTGGCATCATTTGGAGGCTATAAAATGGTAAGTAAGC 547 consensus_9919#1 TCGCGTTGCTTGGCAGTGCACCAT-------------GATGCGAAGGGAAAATGTACATA 470 consensus_9919#3 TCGCGTTGCTTGGCAGTGCCCCAT-------------GATGCGAAGGGAAAATGTACATA 397 consensus_9919#0 TCGCGTTGCTTGGCAGTGCACCATATTGGAAGGAGTAGATGCGAAGGGAAAATGTACATA 2316 consensus_9919#4 ------------------------------------------------AAAATGTACATA 12 consensus_9919#2 TTATTTTGCATTACACTTCAGAAAGGT------TCTAAATGTAGAATTCCATGGCATAAA 601 * * * * * consensus_9919#1 TTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTT-AATGTAGT 529 consensus_9919#3 TTCCCCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTT-AATGTAGT 456 consensus_9919#0 TTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTT-AATGTAGT 2375 consensus_9919#4 TTCACCTTTTGTCTGTTGTATCGACGAGTATTTTTTGTAATGGAAGGCTTT-AATGTAGT 71 consensus_9919#2 TACTTTAGCTGCCTGTAGGTTC--CAATCAGTTTTGACATAGGTTTACTTTTGAAATGAA 659 * * ** **** * ** * * * **** * ** **** * * consensus_9919#1 GCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGAACTTAATATGCAACTAATAGTTGA 589 consensus_9919#3 GCAAAAAAAAAAAAAAAAA----------------------------------------- 475 consensus_9919#0 GCAAATAACTCGCTTGAATTTGTTTCGCTTGTGCGCACTTAATATGCAACTAATAGTTGA 2435 consensus_9919#4 GCAAATAACTCGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 131 consensus_9919#2 TCCATGGTATTGCTTAATCTTGTCAACTACTAGAAGAGATTTTGCGGTAGTATACAAGCC 719 * * * consensus_9919#1 TGAGTATTTGTGCATTTTCGAAAGATTAAGACGGTGTGAAGTGTTCTGAACTGTTTATGC 649 consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 TGAGTATTTGTGCATTT------------------------------------------- 2452 consensus_9919#4 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 157 consensus_9919#2 TATTTTTCCCCTTAGTTATGGACTGAT--------------------------------- 746 consensus_9919#1 AGCAAAGCAATAAACTACGTATGTTGCCTTTTTGAGTCGTGCAGAGATGGAGACAGCTCC 709 consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 ------------------------------------------------------------ consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 CTGATACTTTGCGGAAGGAGGCATTTTGCAGATTATTACAGCGAGCCTTGTGAAAGCAGC 769 consensus_9919#3 ------------------------------------------------------------ consensus_9919#0 ------------------------------------------------------------ consensus_9919#4 ------------------------------------------------------------ consensus_9919#2 ------------------------------------------------------------ consensus_9919#1 GTTTGTATTTTGCCTAAACACAATCCCTAATCTTGTATTTTGCAGATTATT 820 consensus_9919#3 --------------------------------------------------- consensus_9919#0 --------------------------------------------------- consensus_9919#4 --------------------------------------------------- consensus_9919#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||