Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9921 cluster # 9921       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9921#0 length = 579 sequences # 4  
consensus_9921#1 length = 409 sequences # 1  
consensus_9921#2 length = 350 sequences # 1  
consensus_9921#3 length = 310 sequences # 1  

consensusID : consensus_9921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 579
fasta sequence
                              [CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC-GCCTCCGCCGCC-GACGACGACATGGA-CGACGACG-CCATCA-CGGCGCTGATGGACATCGACGACTCCCCCCGCA-GCAGC-GGCGCCGGC-GCCGTC-TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC-CGGCCACCGCGCGGC-CC-GCGCCAACGAGGCC-CGC-GGGCC-CC-TCCCC-TTC-G-CCGGCTTCTAC-AACTCCTTC-GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT-TTTCATGTATCTCGAGACGTCGTGAGATCAATC-TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT]

[+] EMBL CF339980             [CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT]
[+] EMBL AK109256             [ ACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGAA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGG                                                                           ]
[+] EMBL BI797927             [                                                                                                          ATCCCGCCTGCCTCCGCCGCCTGACGACGACATGGATCGACGACGTCCATCATCGGCGCTGATGGACATCGACGACTCCCCCCGCATACAGCAGGCGCCGGCAGCCGTCGTTCCTCGACGACGAGGAGGACCCGGAGGTCTTCCCACGGCCACCGCGCGGCACCAGCGCCAACGAGGCCACGCAGGGCCACCATCCCCATTCAGCCCGACTTCTACAAACTCCTTCTGACGGCGCCGACTTCGACGACCCCGACCTCCCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTGGATTTCTCTTTCATGTATCTCGAGACGTCGTGAGATCCATC TGGGTACCTTTT CTGCCGAaaaaaaaaa                                                  ]
[+] EMBL AU163913             [                                                                                                                                 ACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC G GTCAACGAGGCC CGC GGG C CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATCTTGGGTACCTTTTGCTGCCGATGTTTTTGAAaaaaa                                            ]


>consensus_9921#0 CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCC GCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCC GCCGCCGACGACGACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTC GAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCC TTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT



consensusID : consensus_9921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence
                              [ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA]

[+] EMBL CA753644             [ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA]


>consensus_9921#1 ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCG GCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCG CGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCG ACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGC CGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGAT GGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAG ATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA



consensusID : consensus_9921#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence
                              [CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC]

[+] EMBL OSC16062             [CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC]


>consensus_9921#2 CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCC ACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCG CCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACG ACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGT CTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGG CTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC



consensusID : consensus_9921#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence
                              [GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA]

[+] EMBL AU101299             [GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA]


>consensus_9921#3 GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGG CTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCA TGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATC TCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACC AATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGT TTATAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9921#1      ------------------------------------------------------------
consensus_9921#3      ------------------------------------------------------------
consensus_9921#0      CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCC 60
consensus_9921#2      ------------------------------------------------------------
                                                                                  

consensus_9921#1      ------------------------------------------------------------
consensus_9921#3      ------------------------------------------------------------
consensus_9921#0      GCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCC 120
consensus_9921#2      ------------------------------------------------------------
                                                                                  

consensus_9921#1      -------------ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 47
consensus_9921#3      ------------------------------------------------------------
consensus_9921#0      GCCGCCGACGACGACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 180
consensus_9921#2      ------------------------------------------------------------
                                                                                  

consensus_9921#1      CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 107
consensus_9921#3      ------------------------------------------------------------
consensus_9921#0      CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 240
consensus_9921#2      ------------------------------------------------------------
                                                                                  

consensus_9921#1      CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 167
consensus_9921#3      ------------------------------------------------------------
consensus_9921#0      CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 300
consensus_9921#2      ------------------------------------------------------------
                                                                                  

consensus_9921#1      TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 227
consensus_9921#3      ------------------------------------------------GGAGTCGAC--C 10
consensus_9921#0      TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 360
consensus_9921#2      CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCC 60
                                                                         *    *   

consensus_9921#1      AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 287
consensus_9921#3      CACGCGTCCGGCC--GTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 68
consensus_9921#0      AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 420
consensus_9921#2      ACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCG 120
                        *  *      *   * **     *  * * ** *    **     **        * *

consensus_9921#1      TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 346
consensus_9921#3      TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 127
consensus_9921#0      TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 479
consensus_9921#2      CCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACG 180
                       ***    *     **           *   ** *     *       *  *  *   * 

consensus_9921#1      CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCAAAAAA 405
consensus_9921#3      CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 186
consensus_9921#0      CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 538
consensus_9921#2      ACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGA-GGACGNGNAGG 239
                           *  **    * *      *   * * ** ** * *** *     * *     *  

consensus_9921#1      AAAA-------------------------------------------------------- 409
consensus_9921#3      CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTC 246
consensus_9921#0      CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT------------------- 579
consensus_9921#2      TCTTNCCCGGNC-----ANCGCGCGGNCCGCGCAACGAGGNCC-GCGGGCANCTTACNCT 293
                                                                                  

consensus_9921#1      ------------------------------------------------------------
consensus_9921#3      TGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGA--TTCACAAGATAGATTTTTGTTTAT 304
consensus_9921#0      ------------------------------------------------------------
consensus_9921#2      TNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC--- 350
                                                                                  

consensus_9921#1      ------
consensus_9921#3      AAAAAA 310
consensus_9921#0      ------
consensus_9921#2      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)