These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1697 fasta sequence [ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCGGCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCCTAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCGCCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACATGGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTCGTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTCCGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGACTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTGGTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTATTCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCTGATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTTTTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGACTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAATGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTTTTTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCTGCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACATGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAGGGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAATTATTTTGAATGTGTTCA] [+] EMBL AK063551 [ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCGGCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCCTAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCGCCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACATGGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTCGTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTCCGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGACTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTGGTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTATTCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCTGATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTTTTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGACTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAATGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTTTTTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCTGCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACATGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAGGGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAATTATTTTGAATGTGTTCA] consensusID : consensus_993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TGCACAAAATAACCCTGAACCCCCAGGTTGGCTATCAAAGATTTTTGGNAAGTTGATGACCAGACAANCCTTGNTTGCCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAG] [-] EMBL OSS16302A [TGCACAAAATAACCCTGAACCCCCAGGTTGGCTATCAAAGATTTTTGGNAAGTTGATGACCAGACAANCCTTGNTTGCCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_993#0 ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCG 60 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCC 120 consensus_993#1 ------------------------------------------------------------ consensus_993#0 TAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCG 180 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACAT 240 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTC 300 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTC 360 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTG 420 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGT 480 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGA 540 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTG 600 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACA 660 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAA 720 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAAC 780 consensus_993#1 ------------------------------------------------------------ consensus_993#0 ATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGT 840 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTAT 900 consensus_993#1 ------------------------------------------------------------ consensus_993#0 TCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCT 960 consensus_993#1 ------------------------------------------------------------ consensus_993#0 GATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTT 1020 consensus_993#1 ------------------------------------------------------------ consensus_993#0 TTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGA 1080 consensus_993#1 ------------------------------------------------------------ consensus_993#0 CTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAA 1140 consensus_993#1 ----------------------TGCA-CAAAATAACCCTGAACCCCCAGGTTGGCTATCA 37 *** ** * * ** * * * * *** * * consensus_993#0 TGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTT 1200 consensus_993#1 ------AAGATTTTTGGNAA----GTTGATGACCAGACAANCCTTGNTTGCCGCCGATCC 87 ** ***** ** ** ** ** ** * * * * * consensus_993#0 T-TTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCT 1259 consensus_993#1 CACCTTCGGAAACATTATAAATTTCAATGT-TGGTGCATTAGTTGATT----TAGACATT 142 ** * ** *** ** *** * ** * * * * ** * * consensus_993#0 GCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACA 1319 consensus_993#1 CCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAAC-ATGTTCTTCTGGAAA-- 199 ** *** * * * ** * * * * ** ** ***** **** consensus_993#0 TGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGA 1379 consensus_993#1 --GAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGA 257 *** ****************************************************** consensus_993#0 GAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTG 1439 consensus_993#1 GAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTG 317 ************************************************ *********** consensus_993#0 CAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCA 1499 consensus_993#1 CAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCA 377 ************************************************************ consensus_993#0 AGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCT 1559 consensus_993#1 AGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCT 437 ************************************************************ consensus_993#0 GATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAG 1619 consensus_993#1 GATTTTTTAG-------------------------------------------------- 447 ********** consensus_993#0 GGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAA 1679 consensus_993#1 ------------------------------------------------------------ consensus_993#0 TTATTTTGAATGTGTTCA 1697 consensus_993#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||