cluster # 994

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Oryza sativa
cluster # 994 cluster # 994 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_994#0 length = 401 sequences # 1

consensus_994#1 length = 332 sequences # 1

consensusID : consensus_994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [CAGGTCCTTTTTTGCGAAATTGCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGTCAACGCACCGTTGACCTNATGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACTNTCCCACTCCTCGTCTTCTTCGGATTGCCTATATATAAAGGCCACACCTCGTCTTCTCCATTCTCCGTCTCCAAGTTTTTTTTTTCTCTCTCTCTTTGTCGCCGTTAGCTTGAGGCGGCGAGGAGCTCGACGACGTGGAGGACATGGTGGCGAAGGCGGGCGCCGGCGTTTGTGCCCTCTCCTGGGATGANGGAGGGCGAGGTGTCCCNCGGCGAGAAGAGGAGGAGGNCGGATGGGGATGGCTCGTCGACGTTTGCGGCGGCGGCGGCATAGGGGCGTTCA]

[+] EMBL AU064690             [CAGGTCCTTTTTTGCGAAATTGCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGTCAACGCACCGTTGACCTNATGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACTNTCCCACTCCTCGTCTTCTTCGGATTGCCTATATATAAAGGCCACACCTCGTCTTCTCCATTCTCCGTCTCCAAGTTTTTTTTTTCTCTCTCTCTTTGTCGCCGTTAGCTTGAGGCGGCGAGGAGCTCGACGACGTGGAGGACATGGTGGCGAAGGCGGGCGCCGGCGTTTGTGCCCTCTCCTGGGATGANGGAGGGCGAGGTGTCCCNCGGCGAGAAGAGGAGGAGGNCGGATGGGGATGGCTCGTCGACGTTTGCGGCGGCGGCGGCATAGGGGCGTTCA]




>consensus_994#0
CAGGTCCTTTTTTGCGAAATTGCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGT
CAACGCACCGTTGACCTNATGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACTN
TCCCACTCCTCGTCTTCTTCGGATTGCCTATATATAAAGGCCACACCTCGTCTTCTCCAT
TCTCCGTCTCCAAGTTTTTTTTTTCTCTCTCTCTTTGTCGCCGTTAGCTTGAGGCGGCGA
GGAGCTCGACGACGTGGAGGACATGGTGGCGAAGGCGGGCGCCGGCGTTTGTGCCCTCTC
CTGGGATGANGGAGGGCGAGGTGTCCCNCGGCGAGAAGAGGAGGAGGNCGGATGGGGATG
GCTCGTCGACGTTTGCGGCGGCGGCGGCATAGGGGCGTTCA

consensusID : consensus_994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [CAGGTCCTTTTTTGCNAAATTNCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGTCAACGGCACCGTTAACGTAGTGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACTGTCCCACTCCTCGTTTTCTTCGGATTGCCTATATATANNGGCCACACCTCGTTTTCTCCATTCTCCGTNTCCANGTTTTTTTTTTCNCTCTCTCTTTGTCGCCGTTAGCTTNAGGCGGCGAGGAGCTCGACGACGTGGAGGACATGGTGGCGAANGCGGCGCCGGCGCTTGTNCCCTCTCCTGGAATNAGGAGGGCAAGGTGTCCCGNGGCG]

[+] EMBL AU063794             [CAGGTCCTTTTTTGCNAAATTNCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGTCAACGGCACCGTTAACGTAGTGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACTGTCCCACTCCTCGTTTTCTTCGGATTGCCTATATATANNGGCCACACCTCGTTTTCTCCATTCTCCGTNTCCANGTTTTTTTTTTCNCTCTCTCTTTGTCGCCGTTAGCTTNAGGCGGCGAGGAGCTCGACGACGTGGAGGACATGGTGGCGAANGCGGCGCCGGCGCTTGTNCCCTCTCCTGGAATNAGGAGGGCAAGGTGTCCCGNGGCG]




>consensus_994#1
CAGGTCCTTTTTTGCNAAATTNCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGT
CAACGGCACCGTTAACGTAGTGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACT
GTCCCACTCCTCGTTTTCTTCGGATTGCCTATATATANNGGCCACACCTCGTTTTCTCCA
TTCTCCGTNTCCANGTTTTTTTTTTCNCTCTCTCTTTGTCGCCGTTAGCTTNAGGCGGCG
AGGAGCTCGACGACGTGGAGGACATGGTGGCGAANGCGGCGCCGGCGCTTGTNCCCTCTC
CTGGAATNAGGAGGGCAAGGTGTCCCGNGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_994#0      CAGGTCCTTTTTTGCGAAATTGCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGT 60
consensus_994#1      CAGGTCCTTTTTTGCNAAATTNCGGATACACCCTTCCCGAAGAGCCCCAGAACGGCCGGT 60
                     *************** ***** **************************************

consensus_994#0      CAACG-CACCGTTGACCTNATGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACT 119
consensus_994#1      CAACGGCACCGTTAACGTAGTGAGGGGGGGGGGGCAGTTTCGTAAATTCCACGAAACACT 120
                     ***** ******* ** *  ****************************************

consensus_994#0      NTCCCACTCCTCGTCTTCTTCGGATTGCCTATATATAAAGGCCACACCTCGTCTTCTCCA 179
consensus_994#1      GTCCCACTCCTCGTTTTCTTCGGATTGCCTATATATANNGGCCACACCTCGTTTTCTCCA 180
                      ************* **********************  ************* *******

consensus_994#0      TTCTCCGTCTCCAAGTTTTTTTTTTCTCTCTCTCTTTGTCGCCGTTAGCTTGAGGCGGCG 239
consensus_994#1      TTCTCCGTNTCCANGTTTTTTTTTTCNCTCTCTCTTTGTCGCCGTTAGCTTNAGGCGGCG 240
                     ******** **** ************ ************************ ********

consensus_994#0      AGGAGCTCGACGACGTGGAGGACATGGTGGCGAAGGCGGGCGCCGGCGTTTGTGCCCTCT 299
consensus_994#1      AGGAGCTCGACGACGTGGAGGACATGGTGGCGAANGCGG-CGCCGGCGCTTGTNCCCTCT 299
                     ********************************** **** ******** **** ******

consensus_994#0      CCTGGGATGANGGAGGGCGAGGTGTCCCNCGGCGAGAAGAGGAGGAGGNCGGATGGGGAT 359
consensus_994#1      CCTGGAATNAGG-AGGGCAAGGTGTCCCGNGGCG-------------------------- 332
                     ***** ** * * ***** *********  ****                          

consensus_994#0      GGCTCGTCGACGTTTGCGGCGGCGGCGGCATAGGGGCGTTCA 401
consensus_994#1      ------------------------------------------