These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1455 fasta sequence [GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC-TCGGCGACT-GT-GGCG--CCGTC-AACCACGACA-GCCACGCCTTC-GTC-GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT-GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA-GGGTGAATTTGGT-AATTAA-GCACAATCACACAGTTGAGAGTTGTAAAATCTCT-ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAATTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAATATAAGATATTTTGATA] [+] EMBL CB670172 [GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCG ] [+] EMBL AK061217 [ TCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGCCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CCGTC AACCACGACA GCCACGCCTTC GTC GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGATTAAGTTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAATATAAGATATTTTGATA] [-] EMBL CB670173 [ CAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATTGTCGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGTCGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGATGTCGCGCTGCTCCTCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAAAGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CGGTC AACCACGACA GCCACGCCTTC GTC GGGCTGTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGATTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTGGTAGCCGCGGCAGTCGCCGTCGTGCTGGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAAGGGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGA ] [+] EMBL OSS0765A [ TGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CGTC AACCACGACA GCCACGCCTTC GTC GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAA ] [+] EMBL AU078161 [ CCACCTTCGGCGACTAGTGGGCGGCCCGTCAAACCACGACAGGCNACGCCTTCAGTCAGGGCTCTACAAGGACGTGGA CGCTACTGCGGGACATGGTNGGCGGAGGAAGACGGCG NCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAA ] [+] EMBL AU081026 [ AAA GGGTGAATTTGGTGAATTAAGGCACAATCACACAGTTGAGAGTTGTAAAATCTCTNACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAAaaa ] consensusID : consensus_9942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGTNCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGACATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGGCCATCTCC] [+] EMBL OSS1004A [TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGTNCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGACATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGGCCATCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9942#0 GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCAT 60 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 CTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGT 120 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTG 180 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCC 240 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 ACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCT 300 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 CGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTT 360 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 CGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAG 420 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 AAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTT 480 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTT 540 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 TGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGC 600 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 CGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTA 660 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 CTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGC 720 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCG 780 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGAT 840 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 ACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGA 900 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCA 960 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACAT 1020 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 GCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACCTCGGCGACTGT-GGCGCCG 1079 consensus_9942#1 --TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGT 58 *************** ***** **************************** ** ** consensus_9942#0 TCAACCACGACAGCCACGCCTTCGTCGGGCTCTACAAGGACGTGGACCGCTACTGCGGGA 1139 consensus_9942#1 NCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGA 118 ******** *** **** ********************* ************** **** consensus_9942#0 CATGGTGGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGG 1199 consensus_9942#1 CATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGG 178 ************************ ********* ************** ********** consensus_9942#0 CCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCA 1259 consensus_9942#1 CCATCTCC---------------------------------------------------- 186 ******** consensus_9942#0 CCATGTTTCCATTGAAAAAAGGGTGAATTTGGTAATTAAGCACAATCACACAGTTGAGAG 1319 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 TTGTAAAATCTCTACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTC 1379 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 AAACTGCTTTAATTTTGAAAAAATTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAAT 1439 consensus_9942#1 ------------------------------------------------------------ consensus_9942#0 ATAAGATATTTTGATA 1455 consensus_9942#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||