cluster # 995

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 995 cluster # 995 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_995#0 length = 878 sequences # 1

consensus_995#1 length = 558 sequences # 1

consensusID : consensus_995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 878
fasta sequence

                              [CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTGGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACGGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTGATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG]

[+] EMBL AK107544             [CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTGGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACGGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTGATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG]




>consensus_995#0
CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGC
AACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCG
GTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGA
GTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGC
CTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGC
AGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTG
GGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACG
GCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTG
ATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAA
TTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAAT
TTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAA
GTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGAC
GATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAA
TTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGG
ATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG

consensusID : consensus_995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCCGCTCCGCCGCGACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGGAGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGGCCTCGATGGTGGGGCTACGGCGCGGGCCATCCTCTCTCTTTCTCTCCTCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTTGGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGACGGCGATGGAGACGAGCTCGCCCATTTATGTGATTTTTTCCTCTCCTTTTCCCCTTTTTTCTAGGGTTCTCGATGTGCATATCTGTCCGAATTGATTCTTTTTCATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGATTTAAAAAAAAAAAAATANATNANNTTNNNNATNAATAANANATTATAATTTTATTTATTTTTNTNNATTTATTTTTATTAATTATAAACCTGGGGG]

[+] EMBL CA758488             [CCCGCTCCGCCGCGACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGGAGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGGCCTCGATGGTGGGGCTACGGCGCGGGCCATCCTCTCTCTTTCTCTCCTCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTTGGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGACGGCGATGGAGACGAGCTCGCCCATTTATGTGATTTTTTCCTCTCCTTTTCCCCTTTTTTCTAGGGTTCTCGATGTGCATATCTGTCCGAATTGATTCTTTTTCATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGATTTAAAAAAAAAAAAATANATNANNTTNNNNATNAATAANANATTATAATTTTATTTATTTTTNTNNATTTATTTTTATTAATTATAAACCTGGGGG]




>consensus_995#1
CCCGCTCCGCCGCGACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACG
GCGCCGCATCGGGGAGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCC
CCTCTCTCCGTCGGCCTCGATGGTGGGGCTACGGCGCGGGCCATCCTCTCTCTTTCTCTC
CTCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGG
TGCCGGCTCGGTTGGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAG
GAGCGCGGTGGACGGCGATGGAGACGAGCTCGCCCATTTATGTGATTTTTTCCTCTCCTT
TTCCCCTTTTTTCTAGGGTTCTCGATGTGCATATCTGTCCGAATTGATTCTTTTTCATGT
AGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGATTTAAAAAAAAAAAAATAN
ATNANNTTNNNNATNAATAANANATTATAATTTTATTTATTTTTNTNNATTTATTTTTAT
TAATTATAAACCTGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_995#0      CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGC 60
consensus_995#1      ------------------------------------------------------------
                                                                                 

consensus_995#0      AACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCG 120
consensus_995#1      ----------------------------------------------CCCGCTCCGCCGCG 14
                                                                   *** * * **  **

consensus_995#0      GTGGCGCCGCTCCATCTCCCCC-CTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCG 179
consensus_995#1      ACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGG 74
                        ********** ******** **** ****** ***    ******** ******* *

consensus_995#0      AGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGG 239
consensus_995#1      AGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGG 134
                     ***************** * * ************  **** *********** ** ****

consensus_995#0      CCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAG 299
consensus_995#1      CCTCGATGGTGGGGCTACGGCGCGGGCCATCCT-CTCTCTTTCTCTCCTCTGCCTCCGAG 193
                     ******************** ************ ******** **** ************

consensus_995#0      CAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTT 359
consensus_995#1      CAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTT 253
                     ********************* ********************* ******** * *****

consensus_995#0      GGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGAC 419
consensus_995#1      GGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGAC 313
                     ********** *************** ******** * ****** ******** ******

consensus_995#0      GGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGT 479
consensus_995#1      GGCGATGGAGACGAGCT------------------------------CGCCCATTTATGT 343
                     ******** ********                               ************

consensus_995#0      GATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGA 539
consensus_995#1      GATTTTTTCCTCTCCTTTTCCCCTTTTTT-CTAGGGTTCTCGATGTGCATATCTGTCCGA 402
                     *******************   ******* *************** * ******** ***

consensus_995#0      ATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAG-CTCCCCAATTGA 598
consensus_995#1      ATTGATTCTTTTT-CATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGA 461
                     ************* ** ************* ******** ******* ** *** * ***

consensus_995#0      ATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATA 658
consensus_995#1      TTTAAAAAAAAAA----AAATANATNANNTTNNNNATNAATAANANATTATAATTTTATT 517
                      **    *   *      * *  **    *      *  **   * ** **     *** 

consensus_995#0      AAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTG 718
consensus_995#1      TATTTTTNTNNAT-------TTATTTTTATTAATTATAAACCTGGGGG------------ 558
                      * *  *             ***     ** *   ** **   * **             

consensus_995#0      ACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGA 778
consensus_995#1      ------------------------------------------------------------
                                                                                 

consensus_995#0      AATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCG 838
consensus_995#1      ------------------------------------------------------------
                                                                                 

consensus_995#0      GGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG 878
consensus_995#1      ----------------------------------------