These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1623 fasta sequence [AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA-GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT-GTGGTACTTCTG-CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA-GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG--TCT-GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA-TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTG-TTAGTGCATAAAAGGTATTAAAATTGCGTACCCGAAA] [+] EMBL AK105342 [AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT GTGGTACTTCTG CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCACATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTC TTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG TCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTG TTAGTGCATAAAAGGTATTAAAATTGCGTACCCG ] [+] EMBL AU173801 [ GAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGG ] [+] EMBL CA766837 [ ATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT GTGGTACTTCTG CGGTTGGCTGTATGCCTCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTGTCTCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGNTTGATGTCCTCACGCGCATCCTATGNTCATAAATTGTAAGCCATTTTGCGGTCTGC ] [+] EMBL BI806723 [ TGACCCTAGGGAGAGTAAAATATG TAACTGGAAT GTCGTGACTTGTGAGAGGACATGGTGGTACTTCTGCCGGTTGCCTGTAT CCCCTGGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTG CCTTCTGAGTTGTGAATGGGAATATATGTAAC CTGTTGCTAC TTTACAGTCTTTTTTTTGGCGTGATGGA GTTGTCTCATTTTGGTTGCTAGATAAAAA GGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGA CAAGCTGAATAGTGTTAATAATGTTGTACTG TCTCTGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAA CCA TTT CGGTCTGCTGAAC AGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTGTTTAGTGCATAAAAGGTACTAAAATTGCGTAaaaaaaa] [+] EMBL CA756560 [ T GTGGTACTTCTG CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTGTCTCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTAC ] [+] EMBL AU173802 [ AGTGACCAGGTTCTTGCCCTTNTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTC TTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG TCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTaaaaaaaa ] consensusID : consensus_9951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [GCCACGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGATATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATTTTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC] [+] EMBL CB683034 [GCCACGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGATATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATTTTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9951#0 AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCT 60 consensus_9951#1 -----------------------------------------GCCACGGGTTCGGCCGCCT 19 **** ************** consensus_9951#0 CCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACG 120 consensus_9951#1 CCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACG 79 ************************************************************ consensus_9951#0 GGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGA 180 consensus_9951#1 GGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGA 139 ************************************************************ consensus_9951#0 AGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCC 240 consensus_9951#1 AGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCC 199 ************************************************************ consensus_9951#0 AGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCA 300 consensus_9951#1 AGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCA 259 ************************************************************ consensus_9951#0 CTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAG----------------------- 337 consensus_9951#1 CTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGA 319 ************************************* consensus_9951#0 ------------------------------------------------TGTTTTTATGGG 349 consensus_9951#1 TATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGG 379 ************ consensus_9951#0 TTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGA 409 consensus_9951#1 TTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGA 439 ************************************************************ consensus_9951#0 ATTCGGTGCCAATTTTATAGATCCAAAG-------------------------------- 437 consensus_9951#1 ATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATT 499 **************************** consensus_9951#0 ----------------------------------------------------TTAATTCT 445 consensus_9951#1 TTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCT 559 ******** consensus_9951#0 TGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGA 505 consensus_9951#1 TGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGA 619 ************************************************************ consensus_9951#0 TGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAAT 565 consensus_9951#1 TGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAAT 679 ************************************************************ consensus_9951#0 GTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGC 625 consensus_9951#1 GTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGC 739 ************************************************************ consensus_9951#0 GTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAAT 685 consensus_9951#1 GTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC--------------- 784 *************** ***************************** consensus_9951#0 ATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGA 745 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCA 805 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 GAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGA 865 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 CGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATT 925 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTT 985 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGAC 1045 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 CGTAGGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACATGTGGTAC 1105 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TTCTGCGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTAC 1165 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 GAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATAGGAACGCTGTTGCTAC 1225 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAG 1285 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 GGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATA 1345 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 GTGTTAATAATGTTGTACTGTCTGGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTT 1405 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATG 1465 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 TTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCATTTGCGGTCTGCTGAA 1525 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 CAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTT 1585 consensus_9951#1 ------------------------------------------------------------ consensus_9951#0 GTTAGTGCATAAAAGGTATTAAAATTGCGTACCCGAAA 1623 consensus_9951#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||