cluster # 996

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Oryza sativa
cluster # 996 cluster # 996 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_996#0 length = 541 sequences # 1

consensus_996#1 length = 303 sequences # 1

consensusID : consensus_996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCTTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGATTACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGCNNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNCGNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCGTTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGTCCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTGACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTGTCCCGTT]

[+] EMBL CA758480             [AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCTTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGATTACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGCNNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNCGNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCGTTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGTCCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTGACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTGTCCCGTT]




>consensus_996#0
AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAG
CTAGCTAGCGAATTAGTGTCTTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGATTAC
GTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGTTCGTTGTA
CTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGCNNCNCC
TNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNCGNGGGC
CCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCGTTCCTC
CTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGTCCTTCA
CGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTGACGTTT
CTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTGTCCCGT
T

consensusID : consensus_996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TATACTATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNATTCTTGTGTNGATTACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGGCGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTGCAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT]

[+] EMBL OS0143A              [TATACTATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNATTCTTGTGTNGATTACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGGCGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTGCAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT]




>consensus_996#1
TATACTATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCG
TCTTCTAGCTAGTTATTACGNATTCTTGTGTNGATTACGTTGACTAATTAATGGCGAATT
CGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTCGTTGTACTCTCGCTCGCCGCCGTGC
TGCTCGCTCTCGACGGCGGCGGCGGCGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGA
CGGTGAACTTCAGCATCGGCGTGCAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCG
GCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_996#0      AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAG 60
consensus_996#1      -------------------TATACTATA--CCATATCTTACCAGACTAGATCTTGCTTAG 39
                                        *********  ******************************

consensus_996#0      CTAGCTAGCGAATTAGTGTC---TTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGAT 117
consensus_996#1      CTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNAT----TCTTGTGTNGAT 95
                     ********************   ** **** ********** *     ** ***** ***

consensus_996#0      TACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGT---TC 174
consensus_996#1      TACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTC 155
                     ***************** **** ********************************   **

consensus_996#0      GTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGC 234
consensus_996#1      GTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGG---------- 205
                     *************************************** **********          

consensus_996#0      NNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNC 294
consensus_996#1      --CGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTG 263
                       * *** * ** * **** ***   *  *  * **  ** *  ** **** ******  

consensus_996#0      GNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCG 354
consensus_996#1      CAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT-------------------- 303
                       ****  ** * *  *  ******** **  ** ** **                    

consensus_996#0      TTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGT 414
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      CCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTG 474
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      ACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTG 534
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      TCCCGTT 541
consensus_996#1      -------