These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 778 fasta sequence [GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTCCAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTATTAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAGAGACAGCAAAGAATGATCATGTTGATCATTCCGATCAA-GAATCCTC-AACTTACCTGATCTAGGAAAGGA--AAAAC-GTACCAAAAGATTTGGAAGCTCTAGCT-GGGGCTAAAAAGGATGTACCTAAGGAAGC-GGAAGTTATTGAAATGAATTCC-ATGATTTAGACAACAAGATGGGGAGGAACA-TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG-GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG-TG-C-ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT-GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCA-CCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAAA] [+] EMBL CA764012 [GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTCCAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTATTAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAGAGACAGCAAAGAATGATCATGTTGATCATTCCGATCAA GAATCCTCAAACTTACCTGATCTAGG AAGGA AAAAC GTACCAAAAGATTTGGAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCCAATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGCCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG CAATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTTGGCCGATGNTTTTGAATATGCTTCCTCAGTAGCCA CCTTGAGATGGTAGCATTTAGTTTTAAAGGTGNATTTTCATTGNCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATT ] [+] EMBL BI796974 [ TTGATCATTCCGATCAAGGAATCCTC AACTTACCTGATCTAGGAAAGCA AAAAC GTACCAAAAGATTTGGAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCC ATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGGCGCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTA CCA CCTTGAGATGTTA CATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTCCAAAA ] [+] EMBL BI796128 [ tcCCTC AACTTACCTGATCTAGGAAAAGAAGAAAACGGTACC AAAGATTT GAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCCAATGATTTAGAC ACAAGATGGGGAGGAACACTTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACCAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACCACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAA GGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG T C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCACCCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAA ] [+] EMBL BI795178 [ GAAGCTCTA CTGGGGGCTAAAAAGGATGTACCTAAGGAA C GGAAGTTATTGAAATGAATTCC ATGATTTAGAC AC AGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACCAAGAAATCGTCTAATCGTAATGTGC AGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACCACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTGCCGCC ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCACCCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATC AATCAAGTAATTTTGCAAAAA] [+] EMBL BI798621 [ GGGCTAAAAAGGATGTACCTAAGGAAGCGGGAAGTTATTGAAATGAATTCC ATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAAC AAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCA CCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAA ] [+] EMBL AA749556 [ ACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAG TTCTGAATA TG TG C A TG TGCT GAGT ] consensusID : consensus_9962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CAAGGGGGCTTTTCCTCTTCACTATTTAAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTATTAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAAGAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTACCCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGAACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAGGATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTCCAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTTTTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTCTGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGATGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTTATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT] [+] EMBL CA764366 [CAAGGGGGCTTTTCCTCTTCACTATTTAAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTATTAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAAGAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTACCCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGAACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAGGATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTCCAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTTTTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTCTGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGATGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTTATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9962#0 GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTC 60 consensus_9962#1 ---------------------------------CAAGGGGGCTTTTCCTCTTCACTATTT 27 * * *************** consensus_9962#0 CAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTAT 120 consensus_9962#1 AAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTAT 87 **** ****************** ******** ***** **** ******* ***** consensus_9962#0 TAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAG 180 consensus_9962#1 TAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAA-------------------- 127 ******************** ******* * ********* consensus_9962#0 AGACAGCAAAGAATGATCATGTTGATCATTCCGATCAAGAATCCTCAACTTACCTGATCT 240 consensus_9962#1 ------------------------------------------------------------ consensus_9962#0 AGGAAAGGAAAAACGTACCAAAAGATTTGGAAGCTCTAGCTGGGGCTAAAAAGGATGTAC 300 consensus_9962#1 -------GAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTAC 180 ****** ************************** ****** **** ****** consensus_9962#0 CTAAGGAAGCGGAAGTTATTGAAATGAATTCCA-TGATTTAGACAACAAGATGGGGAGGA 359 consensus_9962#1 CCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGA 240 * **** * **** *** ****** ** **** ***************** ******** consensus_9962#0 ACATTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATC 419 consensus_9962#1 ACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAG------------- 287 ******************* ******** * **************** consensus_9962#0 GTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTC 479 consensus_9962#1 ------------------GATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTC 329 ** *********** *************** *** ******* consensus_9962#0 CAGATCCTACTGAATACGCAACGGGAAGGGGGGCAACCAGACTCACACTTCCTCACGGTT 539 consensus_9962#1 CAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTT 389 ***************** *** ********** **** ****** ****** ** **** consensus_9962#0 TTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTC 599 consensus_9962#1 TTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTC 449 ** ************************* ****************** * ** ******* consensus_9962#0 TGAATATTGTGCA-TTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTTGCCGA 658 consensus_9962#1 TGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGA 509 ************* ************* *** ************************* ** consensus_9962#0 TGTTTTTGAATATGCTTCCTCAGTAGCCACCTTGAGATGTTAGCATTTAGTTTTAAAGTT 718 consensus_9962#1 TGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTT 569 **************** ******** ********************* *********** consensus_9962#0 GTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAAA 778 consensus_9962#1 ATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT---------- 619 ************************** ******* ************ * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||