cluster # 9966

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Oryza sativa
cluster # 9966 cluster # 9966 Sequences # 7 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9966#0 length = 587 sequences # 7
consensusID : consensus_9966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 587
fasta sequence
                              [CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAGCAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGA-CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC-AAAAGTCA-TTACAGATAGGATTTCTGGAAGAT-CCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACT-GGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGT-GGTGTTATAGCTAAAAAACTT--GGATACACATG-TTTCCATGCCTCATT-ACATTCCACAGTT-GTCT-ACAT-GTCTCATAATATTCT-GTAGTT-GTCTGATAGATATGTCATTCACATGGATTATAAGATGTTCATGATCATTGTTCTAAAAAATGAACNCC-AATTTACCGCCAAAAAA]

[+] EMBL AU077776             [CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAGCAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGACCGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC AAAAGTCA TTACAGATAGGATTTCTGGAAGATCCCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACT GGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGT GGTGTTATAGCTAAAAAACTT  GGATACACATG TTTCCATGCCTCATT ACATTCCACAGTT GTCT ACAT GTCTCATAATATTCT GTAGTT GTCTGATAGATATGTCATTCACATGGATTATAAGATGTTCATGATCATTGTTCTAAAAAA                          ]
[+] EMBL AU077775             [CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAGCAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGA CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC AAAAGTCA TTACAGATAGGATTTCTGGAAGAT CCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACTGGGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGTGGGTGTTATAGCTAAAAAACTTTGGGATACACATGNTTTCCATGCCTCATTAAAATTCCACAGTTGGTCTAAAATGGTCTCATAATAATCTGGTAGTTGGCCTGATAGATAatgg                                                                      ]
[+] EMBL CF279741             [CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAGCAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGA CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC AAAAGTCA TTACAGATAGGATTTCTGGAAGAT CCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCG                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF293278             [CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAGCAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGCTAACGA CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGACAGCTACTTGAAGC AAAAGTCA TTACAGATAGGATTTCTGGAAGAT CCAAGGGATTCGGTTTTGTTA                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM419979             [                                                       GTCAGC ACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGA CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC CAAAGTCACTTACAGATAGGATTTCTGGAAGAT CCCAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACT GGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGT GGTGTTATAGCTAAAAAACTT  GGATACACATG TTTCCATGCCTCATT ACATTCCACAGTT GTCT ACAT GTCTCATAATATTCT GTA TT GTCTGATAGATATGTCATTCACATGGATTATAAGATGTTCATGATC TTGTTCTAAATATTGAACNCC AATTTACCGCCAAAAA ]
[+] EMBL BM420141             [                                                                   CCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGA CGGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGCNAAAAGTCA TTACAGATAGGATTTCTGGAAGAT CCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACT GGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGT GGTGTTATAGCTAAAAAACTT  GGATACACATG TTTCCATGCCTCATT ACATTCCACAGTT GTCT ACAT GTCTCATAATATTCT GTA TT GTCTGATAGATATGTCATTCACATGGATTATAAGATGTTCATGATCATTGTTCTAAATATTGAACACCAAATTTACCGCCAAAAAA]
[-] EMBL CF279740             [                                                                                                                         GGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGC AAAAGTCA TTACAGATAGGATTTTTGGAAGAT CCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGAAGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTTCGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATCACACACT GGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGT GGTGTTATAGCTAAAAAACTT  GGATACACATG TTTCCATGCCTCATT ACATTCCACAGTT GTCT ACAT GTCTCATAATATTCT GTAGTT GTCTGATAGATATGTCATTCACGTGGATTATAAGATGTTCATGATCATTGTTCTAAAAAAaa                        ]




>consensus_9966#0
CGCCCCCTTGCCCACCGAGTCGCCCCTTTCCTCCGTCTTCGGCGACGGCGCCGAGGTCAG
CAACGTGCCGCCGCTGACCGCCCCCAAGCTCTTCATCAGCGGCCTTTCAAGGTTAACGAC
GGATGAGAAGCTTAAAAATGCCTTTGCTCCCTTTGGGCAGCTACTTGAAGCAAAAGTCAT
TACAGATAGGATTTCTGGAAGATCCAAGGGATTCGGTTTTGTTAGATATGCTACTTTAGA
AGAAGCTGAGAATGCTCGGCAGGAGATGAACGCAAAGTTTCTGGATGGATGGGTTATTTT
CGTTGATCCTGCTAAACCAAGGCAGCAGAAGCCTGCTCCTCGTCCTGACACTGATTCATC
ACACACTGGCTTCACAACAAACAAAACTGTAGGATGGTGTGGTTAGTCACTGTGGTGTTA
TAGCTAAAAAACTTGGATACACATGTTTCCATGCCTCATTACATTCCACAGTTGTCTACA
TGTCTCATAATATTCTGTAGTTGTCTGATAGATATGTCATTCACATGGATTATAAGATGT
TCATGATCATTGTTCTAAAAAATGAACNCCAATTTACCGCCAAAAAA
clustalw multiple alignements is not computed in this case