These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1696 fasta sequence [GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGTTCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAGTTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGGAGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATG----GGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAGGGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCAAAAAAAAAAAAAAAGG] [+] EMBL CB675001 [GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGTTCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAGTTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGGAGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATG GGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGT ] [+] EMBL AK108566 [ GGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATGGTCAGGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAGGGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTG ] [-] EMBL CB675002 [ CAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTG ] [-] EMBL CB669503 [ AAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTTTATTACGCGCCGCCCTTCGCGCCTTTTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTGTTTTGCA ] [-] EMBL CB681921 [ GGATCTCTGCTCGGTGATCAAATCTTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTTTATTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTCCATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCAAAAAAAAAAAAAAAGG] [+] EMBL CB681920 [ GTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGACATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAACAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAACACATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTACGAGTGTACATGGGTGATTTGATTTGATCT ] consensusID : consensus_9968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TTCGCGCCTTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTATTTTTTTTGCATTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT] [-] EMBL CB638250 [TTCGCGCCTTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTATTTTTTTTGCATTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9968#0 GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGT 60 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 TCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAG 120 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 TTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGG 180 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 AGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTC 240 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 AAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAG 300 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGC 360 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCG 420 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGC 480 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGC 540 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 AATGGGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTC 600 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAG 660 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCA 720 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 ATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTG 780 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAG 840 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGC 900 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCT 960 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 GTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGAT 1020 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGC 1080 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTC 1140 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGG 1200 consensus_9968#1 ------------------------------------------------------------ consensus_9968#0 CAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCC 1260 consensus_9968#1 ----------------------------------------------------TTCGCGCC 8 ******** consensus_9968#0 TTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTC 1320 consensus_9968#1 TTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTC 68 ** ******* ************************************************* consensus_9968#0 TTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTC 1380 consensus_9968#1 TTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTC 128 ************************************************************ consensus_9968#0 TCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAG 1440 consensus_9968#1 TCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAG 188 ************************************************************ consensus_9968#0 CAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATT 1500 consensus_9968#1 CAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATT 248 ************************************************************ consensus_9968#0 AGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGG 1560 consensus_9968#1 AGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGG 308 ************************************************************ consensus_9968#0 TGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTC 1620 consensus_9968#1 TGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTC 368 ************************************************************ consensus_9968#0 TGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCA 1680 consensus_9968#1 TGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTT-ATTTTTTTTGCA 427 *********************************************** ************ consensus_9968#0 AAAAAAAAAAAA--AAGG-------------------- 1696 consensus_9968#1 TTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT 465 * *** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||