These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1191 fasta sequence [GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA-CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA-GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT-CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTTTTTTTTGACATATGACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA] [+] EMBL AB110181 [GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATAC ] [+] EMBL AK105776 [ CGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTTTTTTTTGACATATGACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA] [+] EMBL BP184620 [ AGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGAGGAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAACAATGGAACTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCCACAGGTTNCCCGGTGTGGG ] [+] EMBL AK068201 [ GTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAG ] [+] EMBL C72581 [ CTACGCCAAGCGCGTGCTGCTCACCGCCGCCGG GAGCGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCG GGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAG CAATGAAAGCGAATGTAAT ACAACTTGGTTTCTAGTAAAGGCAATT CAAAGCGACTNCGGGACTTAGAATCCAGTTTTTGAGGGTCTNTTGTATTCTTAAC ] consensusID : consensus_9972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCACTTCCGGTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCAAGAGGTAAACGTTTGTTGTTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAATAACCGGCTGACAACTCCAGCAGTTCTGAACTGAAGAAATATCTCAGCTGGCCATATTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATAACTCTGTAGACGATACTTGCATTGCAGTTAACAATTGATTCGATCCATGTTGATCTCGAAATATAACACTCATAACTGTAAGAGGTACTAAATGTTTGTTGTGTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC] [+] EMBL CA999187 [CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCACTTCCGGTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCAAGAGGTAAACGTTTGTTGTTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAATAACCGGCTGACAACTCCAGCAGTTCTGAACTGAAGAAATATCTCAGCTGGCCATATTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATAACTCTGTAGACGATACTTGCATTGCAGTTAACAATTGATTCGATCCATGTTGATCTCGAAATATAACACTCATAACTGTAAGAGGTACTAAATGTTTGTTGTGTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC] consensusID : consensus_9972#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CGAGGACGAGACAAGGGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATGACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA764732 [CGAGGACGAGACAAGGGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATGACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9972#0 GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCA 60 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 CCGCCGCCGGCGACGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCC 120 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 GATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCG 180 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 GTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGG 240 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 CGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGG 300 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 TGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGT 360 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 TCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAA 420 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 AGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTA 480 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 TTGGTGCTGAGAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCA 540 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 TTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACG 600 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 CGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTTCCCGGTGTGGGTGGGGAAGGAGAAGG 660 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 CGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACG 720 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ------------------------------------------------------------ consensus_9972#0 TGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCA 780 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 ---------CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCA 51 consensus_9972#0 TATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCA 840 consensus_9972#2 ------------------------------------------------------------ consensus_9972#1 CTTCCG-GTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCA 110 consensus_9972#0 TCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAAT 900 consensus_9972#2 --------------------------------------------------CGAGGACGA- 9 consensus_9972#1 AGAGGTAAACGTTTGTTGTT-TCTTCAGCTGTCAGCAATGG--AGCTGGGCAAGCACAAT 167 * * ** * consensus_9972#0 AACAAG--GAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAAT 958 consensus_9972#2 GACAAG--GGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAAT 67 consensus_9972#1 AACCGGCTGACAACTCCAGCAG----TTCTGAACTGAAGAAATAT-CTCAGCTGGCCATA 222 ** * * * ***** ** ***** *** ** * * * ** ** ** consensus_9972#0 TTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACG 1018 consensus_9972#2 TTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACG 127 consensus_9972#1 TTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATA-ACTCTGTAGACGATACTTGCA 281 ** ** * * * ** * * * * * * * **** ** * * consensus_9972#0 CCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGA-TACGTCA 1077 consensus_9972#2 CCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGA-TACGTCA 186 consensus_9972#1 TTGCAGTTAAC--------AATTGA----TTCGATCCATGT-TGATCTCGAAATATAACA 328 **** *** * *** * * * **** ******* * ** ** consensus_9972#0 GCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATT-TTTTTTTGACATATG 1136 consensus_9972#2 GCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATG 246 consensus_9972#1 -CTCATAACTGTAAGAGGTACTAAATGTTTGTTGTG----------TTCTTCAGCTGTCA 377 *** ** ** ** * ** * * * *** ** ** * consensus_9972#0 ACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA----- 1191 consensus_9972#2 ACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 306 consensus_9972#1 GCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC--------------- 422 *** * ** * ** * ** consensus_9972#0 ------------------------ consensus_9972#2 NGAAAAAAAAAAAAAAAAAAAAAA 330 consensus_9972#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||