These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1400 fasta sequence [CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC-GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG-TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCTGGGCGA] [+] EMBL AK101254 [CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAAGTGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCTGGGCGA] [+] EMBL AU183902 [ GGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGCGGGTGAAGGAGGAGGAGGAGGATGTCCGGA ] [+] EMBL CB672903 [ CATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGG ] [+] EMBL CB672901 [ CATCTCCGGCGAGACGAATCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCTAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACTACCACCGGGAGGCGGAGGAGGATGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCGTTCTGGCGAGTCGGTGGCTGGGTCGAATGAGGCGGACGTCTATAACGAGAGCAGCGACTTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAATGGCGGAGGCTGCGGCTAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGC ] [+] EMBL AU077629 [ CACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCGGGGCGA] consensusID : consensus_9977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTAAAAACCAGCCCGAAAATAACCAAAAAAAGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGTTCGTGCATTGCCCGCCACTCTCCACCGTCTGATGCTGATCGGTCGGCCACAATTTTTTTGGAATAAACTGCTTATTGC] [+] EMBL AK111116 [GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTAAAAACCAGCCCGAAAATAACCAAAAAAAGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGTTCGTGCATTGCCCGCCACTCTCCACCGTCTGATGCTGATCGGTCGGCCACAATTTTTTTGGAATAAACTGCTTATTGC] [+] EMBL AU183244 [ gGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9977#0 CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCC 60 consensus_9977#1 --------GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCC 52 **************************************************** consensus_9977#0 TAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGC 120 consensus_9977#1 TAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGC 112 ************************************************************ consensus_9977#0 CGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGG 180 consensus_9977#1 CGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGG 172 ************************************************************ consensus_9977#0 CGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGG 240 consensus_9977#1 CGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGG 232 ************************************************************ consensus_9977#0 CGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGG 300 consensus_9977#1 CGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGG 292 ************************************************************ consensus_9977#0 GACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGT 360 consensus_9977#1 GACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGT 352 ************************************************************ consensus_9977#0 GTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGG 420 consensus_9977#1 GTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGG 412 ************************************************************ consensus_9977#0 CGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGC 480 consensus_9977#1 CGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGC 472 ************************************************************ consensus_9977#0 CGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGA 540 consensus_9977#1 CGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGA 532 ************************************************************ consensus_9977#0 GGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGA 600 consensus_9977#1 GGTCGAGAAATACGATCTCTCGATCGGGTA---AAAACCAGCCCGAAAATAACCAAAAAA 589 ***************************** ** ** *** * ** * consensus_9977#0 GGAGAGGGA-AAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGCGGTGA 659 consensus_9977#1 AGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGT--------TCGTGC 641 ** * * *** * * * * * ** * ** ** *** consensus_9977#0 AGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACA 719 consensus_9977#1 AT--------------TGCCCGCCACTCTCCACCGTCTGATGCTGAT-CGGTCGGCCACA 686 * ** ** * ***** ** ** * * ** * *** consensus_9977#0 GGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGC 779 consensus_9977#1 ATTTTTTTGGA-ATAAACT--GCTTATTGC------------------------------ 713 * * ** * ** ** * consensus_9977#0 GGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGG 839 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 AGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCGTCGGGCGAGT 899 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 CGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCG 959 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 CCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGG 1019 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 CGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCC 1079 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 TCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGG 1139 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 ATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGA 1199 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 GGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGT 1259 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 TCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGC 1319 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 CGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACC 1379 consensus_9977#1 ------------------------------------------------------------ consensus_9977#0 GGCAGCCTCACGCCTGGGCGA 1400 consensus_9977#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||