These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1024 fasta sequence [CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC-TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC-TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT-GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA] [+] EMBL AK109327 [CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTCTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA] [+] EMBL CB632714 [ CGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAG ] [-] EMBL CB632715 [ GCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTA ] [+] EMBL CA764105 [ TGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGGAGGCGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGT ] [+] EMBL AU077622 [ gncnagnGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTTGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTTGGAAATGATATATGGGACCCAACCATGTTTtaa ] [-] EMBL D43242 [ CTAGCTGCACTGTTNAGAAGCTTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCCAGATATAATGGAGNAGATAAGACTNAAATTCAGGGTTATCACNGCAAGTTTAGGTACAAAAC TGGAGTATNAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATNTGAGACCCAAACATGTTTATGTAG ] consensusID : consensus_9978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA] [+] EMBL BE041008 [CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9978#0 CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 60 consensus_9978#1 ---------------CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 45 ********************************************* consensus_9978#0 CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 120 consensus_9978#1 CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 105 ************************************************************ consensus_9978#0 CTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 180 consensus_9978#1 CTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 165 ****** * *************************************************** consensus_9978#0 GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 240 consensus_9978#1 GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 225 ************************************************************ consensus_9978#0 AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATAC 300 consensus_9978#1 AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGT-------- 277 **************************************************** consensus_9978#0 ATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCT 360 consensus_9978#1 ------------------------------------------------------------ consensus_9978#0 TTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 420 consensus_9978#1 ------TCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 331 ****************************************************** consensus_9978#0 ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 480 consensus_9978#1 ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 391 ************************************************************ consensus_9978#0 CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGG 540 consensus_9978#1 CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGG 451 *************************************************** ******** consensus_9978#0 TGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGA 600 consensus_9978#1 TGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGA 511 ********** ********** ****** ******** ******* ************* consensus_9978#0 TCAAGATGCATT-CTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGA 659 consensus_9978#1 TCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGA 571 ************ **** ** *** * * ******** * ** * *** ******** consensus_9978#0 GAAGCTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAA 719 consensus_9978#1 GAATCTATGCTTTGGTTAACCCATAT-ACTAGCATTTTGAGGATGTTATGGAGAATATTT 630 *** **** * *** ****** * ** **** ** * *** * ******** ** consensus_9978#0 GACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTGGAGTATCAAGGTCGCC 779 consensus_9978#1 CCTTCAATGTT--GGTTTTCACA-TATGCGTGTGTCTAAAGCTATTTTAACG-GATCCTT 686 * ** * **** ***** * * * ** *** ** ** * * ** consensus_9978#0 CTACATCATCCAAGCAGGATGTTGAGG--ATCTGTAACTAGTTTAGCTTTCATTGTCAAA 837 consensus_9978#1 CTATTGCATCT-----GGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGA 741 *** **** ****** * ** * * * ***** * * * * consensus_9978#0 TTACCATGTTGAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAA 897 consensus_9978#1 G-AGGATATTTGATTCATA----------------------------------------- 759 * ** ** * * *** consensus_9978#0 TACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACC 957 consensus_9978#1 ------------------------------------------------------------ consensus_9978#0 GGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATT 1017 consensus_9978#1 ------------------------------------------------------------ consensus_9978#0 TGAGGCA 1024 consensus_9978#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||