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Oryza sativa
cluster # 9978 cluster # 9978       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9978#0 length = 1024 sequences # 6  
consensus_9978#1 length = 759 sequences # 1  

consensusID : consensus_9978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1024
fasta sequence
                              [CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC-TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC-TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT-GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA]

[+] EMBL AK109327             [CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTCTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA]
[+] EMBL CB632714             [                                                              CGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAG                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB632715             [                                                                                                                                                                                                                                                         GCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTA          ]
[+] EMBL CA764105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGGAGGCGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGT                                                                                            ]
[+] EMBL AU077622             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gncnagnGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTTGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTTGGAAATGATATATGGGACCCAACCATGTTTtaa                                                                                                                                                 ]
[-] EMBL D43242               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTAGCTGCACTGTTNAGAAGCTTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCCAGATATAATGGAGNAGATAAGACTNAAATTCAGGGTTATCACNGCAAGTTTAGGTACAAAAC TGGAGTATNAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATNTGAGACCCAAACATGTTTATGTAG                                                                                                                                              ]


>consensus_9978#0 CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT CTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATAC ATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCT TTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGG TGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGA TCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAG AAGCTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAG ACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTGGAGTATCAAGGTCGCCC TACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTA CCATGTTGAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATAC TTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGG ATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGA GGCA



consensusID : consensus_9978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence
                              [CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA]

[+] EMBL BE041008             [CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA]


>consensus_9978#1 CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGC GCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAG ACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGG CGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAA ACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGA AACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATC AAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGC AGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTT TGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAG GAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACT AGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGT GTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAAT TCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9978#0      CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 60
consensus_9978#1      ---------------CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 45
                                     *********************************************

consensus_9978#0      CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 120
consensus_9978#1      CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 105
                      ************************************************************

consensus_9978#0      CTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 180
consensus_9978#1      CTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 165
                      ****** * ***************************************************

consensus_9978#0      GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 240
consensus_9978#1      GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 225
                      ************************************************************

consensus_9978#0      AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATAC 300
consensus_9978#1      AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGT-------- 277
                      ****************************************************        

consensus_9978#0      ATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCT 360
consensus_9978#1      ------------------------------------------------------------
                                                                                  

consensus_9978#0      TTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 420
consensus_9978#1      ------TCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 331
                            ******************************************************

consensus_9978#0      ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 480
consensus_9978#1      ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 391
                      ************************************************************

consensus_9978#0      CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGG 540
consensus_9978#1      CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGG 451
                      *************************************************** ********

consensus_9978#0      TGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGA 600
consensus_9978#1      TGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGA 511
                      ********** ********** ****** ******** *******  *************

consensus_9978#0      TCAAGATGCATT-CTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGA 659
consensus_9978#1      TCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGA 571
                      ************ **** **  *** * * ******** * **  *  *** ********

consensus_9978#0      GAAGCTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAA 719
consensus_9978#1      GAATCTATGCTTTGGTTAACCCATAT-ACTAGCATTTTGAGGATGTTATGGAGAATATTT 630
                      *** **** * ***   ****** *  ** ****  ** * *** * ******** **  

consensus_9978#0      GACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTGGAGTATCAAGGTCGCC 779
consensus_9978#1      CCTTCAATGTT--GGTTTTCACA-TATGCGTGTGTCTAAAGCTATTTTAACG-GATCCTT 686
                         * **  *   **** *****  * *  *  **  *** **    ** *  * **   

consensus_9978#0      CTACATCATCCAAGCAGGATGTTGAGG--ATCTGTAACTAGTTTAGCTTTCATTGTCAAA 837
consensus_9978#1      CTATTGCATCT-----GGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGA 741
                      ***   ****      ******   *    ** *  * *  ***** *     *   * *

consensus_9978#0      TTACCATGTTGAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAA 897
consensus_9978#1      G-AGGATATTTGATTCATA----------------------------------------- 759
                        *  ** **  * * ***                                         

consensus_9978#0      TACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACC 957
consensus_9978#1      ------------------------------------------------------------
                                                                                  

consensus_9978#0      GGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATT 1017
consensus_9978#1      ------------------------------------------------------------
                                                                                  

consensus_9978#0      TGAGGCA 1024
consensus_9978#1      -------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)